Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7566 143 6e-29 seq1878 122 2e-22 >seq7566 Length=2327 Score = 143 bits (158), Expect = 6e-29 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| ||||| || || |||| ||||| |||| | || Sbjct 1458 ACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 1399 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| | || || |||||||| || ||||| Sbjct 1398 GCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGGATACC 1339 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 1338 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACCTCAAG 1279 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | || || | ||| | ||||| Sbjct 1278 GGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 1237 >seq1878 Length=6026 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| ||||| || || || | || || Sbjct 5721 AGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGGCCGTCC 5780 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||||||||| | || || |||||||| || ||||| ||||| || Sbjct 5781 TCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 5840 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||| ||||| || | ||||| || ||||| || ||| Sbjct 5841 TGGATCTTGGACTTCACGTTGTCGATCGTGTCCGAAGACTCCACCTCCAACGTAATTGTC 5900 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 5901 TTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 5932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192374816303090