Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3288 105 5e-18 >seq3288 Length=4615 Score = 105 bits (116), Expect = 5e-18 Identities = 410/654 (63%), Gaps = 49/654 (7%) Strand=Plus/Minus Query 29621 CTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCA 29680 ||||| || | ||| ||||| | | | || | || |||||||| ||||||||| || Sbjct 1207 CTGGGTTCGCGCTCCAGCTGCACCTTGAGTGCATCGACGTGGTCGGCGTAGACGTGCGCG 1148 Query 29681 TCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29739 || |||| | ||| | || || || || | || || || | || ||||||| Sbjct 1147 TCGCCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCGCACGCGCGCGCAATCATGTG 1089 Query 29740 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCT 29799 ||| || | || ||||||||||||||| |||||||| ||||| ||||| || | |||| Sbjct 1088 CGTTAGCAAAGCGTAGCTGGCGATGTTGAAGGGCACACCGAGGCCCATATCGCAGGACCG 1029 Query 29800 CTGGTAGAGCTGGCACGAGAG---------------CTCT-------------------- 29824 |||||| |||||||| || |||| Sbjct 1028 CTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGTCTTCTCTTGCGTACTTGCGCCGCGGGC 969 Query 29825 CCGTCGCT----CACGTAAAACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 |||| | | ||||| ||||| | ||||| ||||| || || |||||||| Sbjct 968 CCGTGGGTACGAAACGTAGAACTGCGCAAACATG---TGGCATGGGGGGAGGGCCATCTT 912 Query 29878 ACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCT 29937 || ||| ||||||||| || | || || |||||| | ||| | ||||| || | Sbjct 911 CTTCAGGTCGGCGGGGTTCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTT 852 Query 29938 GATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNN 29996 || || | | | || || ||||| || || ||| |||| ||| || | Sbjct 851 GAGCTTGTGGATGAC-TTCGGCGAGCTGGTCGACACCCTGGCCCGTGTAATCCGTCTTGG 793 Query 29997 NNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTC 30056 ||||||||||||| ||||| |||||||| || || ||||| | Sbjct 792 AATCGACGTACTCGGCGCCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGC 733 Query 30057 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 30116 | || | |||| || ||| |||| | || || | || |||||| |||||| Sbjct 732 CGATCTCGCGGTGCGTGAGGCCGACGCTGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCC 673 Query 30117 AGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30176 ||||||| || ||| |||| || | ||| |||| ||| || |||||||| Sbjct 672 AGATCTTGACGCCCGCCTCGCTCAGGGCGAGAGAGGATGTGTTGCCTTCGATGAACCACA 613 Query 30177 GCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30230 ||||||| | | |||||| ||||| | ||| || ||||||||||||| Sbjct 612 GCAGCTCGGCGATGACGGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGGAA 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406112535583210