Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq3288 105 5e-18
>seq3288
Length=4615
Score = 105 bits (116), Expect = 5e-18
Identities = 410/654 (63%), Gaps = 49/654 (7%)
Strand=Plus/Minus
Query 29621 CTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCA 29680
||||| || | ||| ||||| | | | || | || |||||||| ||||||||| ||
Sbjct 1207 CTGGGTTCGCGCTCCAGCTGCACCTTGAGTGCATCGACGTGGTCGGCGTAGACGTGCGCG 1148
Query 29681 TCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29739
|| |||| | ||| | || || || || | || || || | || |||||||
Sbjct 1147 TCGCCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCGCACGCGCGCGCAATCATGTG 1089
Query 29740 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCT 29799
||| || | || ||||||||||||||| |||||||| ||||| ||||| || | ||||
Sbjct 1088 CGTTAGCAAAGCGTAGCTGGCGATGTTGAAGGGCACACCGAGGCCCATATCGCAGGACCG 1029
Query 29800 CTGGTAGAGCTGGCACGAGAG---------------CTCT-------------------- 29824
|||||| |||||||| || ||||
Sbjct 1028 CTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGTCTTCTCTTGCGTACTTGCGCCGCGGGC 969
Query 29825 CCGTCGCT----CACGTAAAACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877
|||| | | ||||| ||||| | ||||| ||||| || || ||||||||
Sbjct 968 CCGTGGGTACGAAACGTAGAACTGCGCAAACATG---TGGCATGGGGGGAGGGCCATCTT 912
Query 29878 ACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCT 29937
|| ||| ||||||||| || | || || |||||| | ||| | ||||| || |
Sbjct 911 CTTCAGGTCGGCGGGGTTCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTT 852
Query 29938 GATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNN 29996
|| || | | | || || ||||| || || ||| |||| ||| || |
Sbjct 851 GAGCTTGTGGATGAC-TTCGGCGAGCTGGTCGACACCCTGGCCCGTGTAATCCGTCTTGG 793
Query 29997 NNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTC 30056
||||||||||||| ||||| |||||||| || || ||||| |
Sbjct 792 AATCGACGTACTCGGCGCCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGC 733
Query 30057 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 30116
| || | |||| || ||| |||| | || || | || |||||| ||||||
Sbjct 732 CGATCTCGCGGTGCGTGAGGCCGACGCTGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCC 673
Query 30117 AGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30176
||||||| || ||| |||| || | ||| |||| ||| || ||||||||
Sbjct 672 AGATCTTGACGCCCGCCTCGCTCAGGGCGAGAGAGGATGTGTTGCCTTCGATGAACCACA 613
Query 30177 GCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30230
||||||| | | |||||| ||||| | ||| || |||||||||||||
Sbjct 612 GCAGCTCGGCGATGACGGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGGAA 559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406112535583210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |