Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq3288 129 4e-25
>seq3288
Length=4615
Score = 129 bits (142), Expect = 4e-25
Identities = 421/654 (64%), Gaps = 49/654 (7%)
Strand=Plus/Minus
Query 27115 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 27174
||||| || | ||| ||||| ||| || | || ||||| || ||||||||| |||
Sbjct 1207 CTGGGTTCGCGCTCCAGCTGCACCTTGAGTGCATCGACGTGGTCGGCGTAGACGTGCGCG 1148
Query 27175 TCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 27233
|| |||| | ||| | || || || || | || || || | || |||||||
Sbjct 1147 TCGCCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCGCACGCGCGCGCAATCATGTG 1089
Query 27234 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 27293
||| || | || ||||||||||||||| ||||| || ||||| ||||| || | ||||
Sbjct 1088 CGTTAGCAAAGCGTAGCTGGCGATGTTGAAGGGCACACCGAGGCCCATATCGCAGGACCG 1029
Query 27294 CTGGTAGAGCTGACACGAGAGCTCTCCATCG-------CTTACGTA-------------- 27332
|||||| ||||| || || | || | | ||| ||||
Sbjct 1028 CTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGTCTTCTCTTGCGTACTTGCGCCGCGGGC 969
Query 27333 -----------AAACTGACATATG-GC------GTGGCACGGAGGAAGAGCCATGAGGCC 27374
|||| | | || || |||||| || || || |||||
Sbjct 968 CCGTGGGTACGAAACGTAGAACTGCGCAAACATGTGGCATGGGGGGAGGGCCATCTTCTT 909
Query 27375 CAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434
|| ||| ||||||||| |||| || || |||||| | ||| | ||||| || |||
Sbjct 908 CAGGTCGGCGGGGTTCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTTGAG 849
Query 27435 GAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATG- 27492
|| | | | || || ||||| || || ||| |||| ||| || | || ||
Sbjct 848 CTTGTGGATGAC-TTCGGCGAGCTGGTCGACACCCTGGCCCGTGTAATC---CGTCTTGG 793
Query 27493 --TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTC 27550
|| |||||| || |||||||||||||||||||| |||||||| || || ||||| |
Sbjct 792 AATCGACGTACTCGGCGCCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGC 733
Query 27551 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 27610
| || | |||| || ||| |||| | || || | || |||||| ||||||
Sbjct 732 CGATCTCGCGGTGCGTGAGGCCGACGCTGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCC 673
Query 27611 AGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 27670
||||||| || ||| |||| || | ||| |||| ||| || ||||||||
Sbjct 672 AGATCTTGACGCCCGCCTCGCTCAGGGCGAGAGAGGATGTGTTGCCTTCGATGAACCACA 613
Query 27671 GCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 27724
||||||| | | |||||| ||||| | ||| || |||||||||||||
Sbjct 612 GCAGCTCGGCGATGACGGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGGAA 559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369461108018285
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |