Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3288 129 4e-25 >seq3288 Length=4615 Score = 129 bits (142), Expect = 4e-25 Identities = 421/654 (64%), Gaps = 49/654 (7%) Strand=Plus/Minus Query 27115 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 27174 ||||| || | ||| ||||| ||| || | || ||||| || ||||||||| ||| Sbjct 1207 CTGGGTTCGCGCTCCAGCTGCACCTTGAGTGCATCGACGTGGTCGGCGTAGACGTGCGCG 1148 Query 27175 TCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 27233 || |||| | ||| | || || || || | || || || | || ||||||| Sbjct 1147 TCGCCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCGCACGCGCGCGCAATCATGTG 1089 Query 27234 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 27293 ||| || | || ||||||||||||||| ||||| || ||||| ||||| || | |||| Sbjct 1088 CGTTAGCAAAGCGTAGCTGGCGATGTTGAAGGGCACACCGAGGCCCATATCGCAGGACCG 1029 Query 27294 CTGGTAGAGCTGACACGAGAGCTCTCCATCG-------CTTACGTA-------------- 27332 |||||| ||||| || || | || | | ||| |||| Sbjct 1028 CTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGTCTTCTCTTGCGTACTTGCGCCGCGGGC 969 Query 27333 -----------AAACTGACATATG-GC------GTGGCACGGAGGAAGAGCCATGAGGCC 27374 |||| | | || || |||||| || || || ||||| Sbjct 968 CCGTGGGTACGAAACGTAGAACTGCGCAAACATGTGGCATGGGGGGAGGGCCATCTTCTT 909 Query 27375 CAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 || ||| ||||||||| |||| || || |||||| | ||| | ||||| || ||| Sbjct 908 CAGGTCGGCGGGGTTCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTTGAG 849 Query 27435 GAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATG- 27492 || | | | || || ||||| || || ||| |||| ||| || | || || Sbjct 848 CTTGTGGATGAC-TTCGGCGAGCTGGTCGACACCCTGGCCCGTGTAATC---CGTCTTGG 793 Query 27493 --TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTC 27550 || |||||| || |||||||||||||||||||| |||||||| || || ||||| | Sbjct 792 AATCGACGTACTCGGCGCCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGC 733 Query 27551 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 27610 | || | |||| || ||| |||| | || || | || |||||| |||||| Sbjct 732 CGATCTCGCGGTGCGTGAGGCCGACGCTGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCC 673 Query 27611 AGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 27670 ||||||| || ||| |||| || | ||| |||| ||| || |||||||| Sbjct 672 AGATCTTGACGCCCGCCTCGCTCAGGGCGAGAGAGGATGTGTTGCCTTCGATGAACCACA 613 Query 27671 GCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 ||||||| | | |||||| ||||| | ||| || ||||||||||||| Sbjct 612 GCAGCTCGGCGATGACGGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGGAA 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369461108018285