Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2519 95.1 2e-14 >seq2519 Length=5298 Score = 95.1 bits (104), Expect = 2e-14 Identities = 433/686 (63%), Gaps = 8/686 (1%) Strand=Plus/Minus Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009 |||| || ||||| ||||| |||||||| | | |||||| || | | || |||| | Sbjct 2447 CCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCT 2388 Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069 |||| |||||||| || ||||| || |||| ||| || || || | | || || | Sbjct 2387 TCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCT 2328 Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129 |||| |||||| ||||| | || || | | || | ||||| || || || | Sbjct 2327 TTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGT 2268 Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189 | || || | | || || || || ||||| ||||| || | || | || ||||| | Sbjct 2267 AGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGT 2208 Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAAC 78249 | | || | | ||| || | || || || || || ||||| || || | ||| || Sbjct 2207 TGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGG 2148 Query 78250 TTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTA 78309 ||| | || ||||| || | || || || || |||||||| || || | Sbjct 2147 AGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCA 2088 Query 78310 GAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAA 78369 |||||| || | || || ||||||||||| || || ||| |||||| | | Sbjct 2087 TGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGA 2028 Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 | || ||| || | || || || || || || || | ||| ||||| || | Sbjct 2027 GGAAGCAGGAGGATAGCTGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGT 1968 Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC----C 78485 |||| || | || || | | ||||| ||||| || | || | ||| | Sbjct 1967 GCGTGAAGAACTTGCTGGACATCAAGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCAC 1908 Query 78486 CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTA 78545 | |||| || || || |||||||| | ||| || || || || ||| | |||| Sbjct 1907 CCCAGATG----CCAACGGCGACACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTG 1852 Query 78546 TTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 78605 | | || | | ||||||| | ||||| ||||| || || || || | ||| Sbjct 1851 CCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTTTTGAAGCCGAAGTACTGGTAGTTG 1792 Query 78606 AAGTCTCTCTCGTAAATAATAACAGA 78631 ||||| | ||||| | ||| |||| Sbjct 1791 AAGTCGCGGTCGTATACAATGGCAGA 1766 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || |||||||| || | || |||| | |||||| ||||||||||| || || || ||| Sbjct 3624 GTGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGATAGTACATGCCCGTCTTGAGA 3565 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 || || |||| ||| ||| |||||||| || | ||| | | ||||| || Sbjct 3564 CCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATAGTGGGATCCTTCATG 3505 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 76954 |||||||| | |||||| ||||| ||||| || || | ||| || ||||| Sbjct 3504 TGAATATTGAGCGACTGCGACTGATCAATGAAGGCACCACGATCGGCAGCCAT 3452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694579925810400