Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 95.1 2e-14
>seq2519
Length=5298
Score = 95.1 bits (104), Expect = 2e-14
Identities = 433/686 (63%), Gaps = 8/686 (1%)
Strand=Plus/Minus
Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009
|||| || ||||| ||||| |||||||| | | |||||| || | | || |||| |
Sbjct 2447 CCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCT 2388
Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069
|||| |||||||| || ||||| || |||| ||| || || || | | || || |
Sbjct 2387 TCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCT 2328
Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129
|||| |||||| ||||| | || || | | || | ||||| || || || |
Sbjct 2327 TTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGT 2268
Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189
| || || | | || || || || ||||| ||||| || | || | || ||||| |
Sbjct 2267 AGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGT 2208
Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAAC 78249
| | || | | ||| || | || || || || || ||||| || || | ||| ||
Sbjct 2207 TGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGG 2148
Query 78250 TTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTA 78309
||| | || ||||| || | || || || || |||||||| || || |
Sbjct 2147 AGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCA 2088
Query 78310 GAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAA 78369
|||||| || | || || ||||||||||| || || ||| |||||| | |
Sbjct 2087 TGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGA 2028
Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429
| || ||| || | || || || || || || || | ||| ||||| || |
Sbjct 2027 GGAAGCAGGAGGATAGCTGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGT 1968
Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC----C 78485
|||| || | || || | | ||||| ||||| || | || | ||| |
Sbjct 1967 GCGTGAAGAACTTGCTGGACATCAAGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCAC 1908
Query 78486 CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTA 78545
| |||| || || || |||||||| | ||| || || || || ||| | ||||
Sbjct 1907 CCCAGATG----CCAACGGCGACACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTG 1852
Query 78546 TTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 78605
| | || | | ||||||| | ||||| ||||| || || || || | |||
Sbjct 1851 CCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTTTTGAAGCCGAAGTACTGGTAGTTG 1792
Query 78606 AAGTCTCTCTCGTAAATAATAACAGA 78631
||||| | ||||| | ||| ||||
Sbjct 1791 AAGTCGCGGTCGTATACAATGGCAGA 1766
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841
|| |||||||| || | || |||| | |||||| ||||||||||| || || || |||
Sbjct 3624 GTGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGATAGTACATGCCCGTCTTGAGA 3565
Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901
|| || |||| ||| ||| |||||||| || | ||| | | ||||| ||
Sbjct 3564 CCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATAGTGGGATCCTTCATG 3505
Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 76954
|||||||| | |||||| ||||| ||||| || || | ||| || |||||
Sbjct 3504 TGAATATTGAGCGACTGCGACTGATCAATGAAGGCACCACGATCGGCAGCCAT 3452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694579925810400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |