Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2519 107 3e-18 >seq2519 Length=5298 Score = 107 bits (118), Expect = 3e-18 Identities = 272/414 (66%), Gaps = 0/414 (0%) Strand=Plus/Minus Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 |||| || || || ||||| || ||||| | | ||| || || | | || || | | Sbjct 2447 CCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCT 2388 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 |||| |||||||| || ||||| || |||| ||| || || || | | || || | Sbjct 2387 TCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCT 2328 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 |||| |||||| ||||| | ||| || | | || | ||||| || || || | Sbjct 2327 TTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGT 2268 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784 | || || | |||| || || || ||||| ||||| || | || | || ||||| | Sbjct 2267 AGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGT 2208 Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844 | | || | | ||| || | || ||| || || |||||||| || || | ||| || Sbjct 2207 TGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGG 2148 Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904 ||| |||||||| || | ||||| || || || ||||| || ||||| | Sbjct 2147 AGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCA 2088 Query 76905 GAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT 76958 || || || | ||||||||||| ||||| || ||| ||| |||||| Sbjct 2087 TGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGT 2034 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/178 (71%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 75373 CAACG-TGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 ||||| |||||||||| || | | || | | |||||| ||||||||||| || || | Sbjct 3629 CAACGGTGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGATAGTACATGCCCGTCT 3570 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 | ||||| || |||| ||| ||| |||||||| || | ||| | | ||||| Sbjct 3569 TGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATAGTGGGATCCT 3510 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 75549 || |||||||| | |||||| ||||| ||||| || || | ||| || ||||| Sbjct 3509 TCATGTGAATATTGAGCGACTGCGACTGATCAATGAAGGCACCACGATCGGCAGCCAT 3452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712843188955200