Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 107 3e-18
>seq2519
Length=5298
Score = 107 bits (118), Expect = 3e-18
Identities = 272/414 (66%), Gaps = 0/414 (0%)
Strand=Plus/Minus
Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604
|||| || || || ||||| || ||||| | | ||| || || | | || || | |
Sbjct 2447 CCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCT 2388
Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664
|||| |||||||| || ||||| || |||| ||| || || || | | || || |
Sbjct 2387 TCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCT 2328
Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724
|||| |||||| ||||| | ||| || | | || | ||||| || || || |
Sbjct 2327 TTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGT 2268
Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784
| || || | |||| || || || ||||| ||||| || | || | || ||||| |
Sbjct 2267 AGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGT 2208
Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844
| | || | | ||| || | || ||| || || |||||||| || || | ||| ||
Sbjct 2207 TGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGG 2148
Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904
||| |||||||| || | ||||| || || || ||||| || ||||| |
Sbjct 2147 AGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCA 2088
Query 76905 GAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT 76958
|| || || | ||||||||||| ||||| || ||| ||| ||||||
Sbjct 2087 TGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGT 2034
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/178 (71%), Gaps = 1/178 (1%)
Strand=Plus/Minus
Query 75373 CAACG-TGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431
||||| |||||||||| || | | || | | |||||| ||||||||||| || || |
Sbjct 3629 CAACGGTGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGATAGTACATGCCCGTCT 3570
Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491
| ||||| || |||| ||| ||| |||||||| || | ||| | | |||||
Sbjct 3569 TGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATAGTGGGATCCT 3510
Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 75549
|| |||||||| | |||||| ||||| ||||| || || | ||| || |||||
Sbjct 3509 TCATGTGAATATTGAGCGACTGCGACTGATCAATGAAGGCACCACGATCGGCAGCCAT 3452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712843188955200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |