Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7566 143 6e-29 seq2519 98.7 2e-15 >seq7566 Length=2327 Score = 143 bits (158), Expect = 6e-29 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || |||||||| |||||||| || ||| Sbjct 1240 CAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCYTCCGAC 1299 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 1300 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCYCCCGACCAGCAG 1359 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || |||||||| || || | || || |||| || ||| || Sbjct 1360 CGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 1419 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 1420 CAGAAGGAGTCCACCCTCCACCTGGT 1445 >seq2519 Length=5298 Score = 98.7 bits (108), Expect = 2e-15 Identities = 187/270 (69%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATT 214182 |||| ||| ||||||||||| |||||| |||||| ||||| ||||| || | Sbjct 2631 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTG 2572 Query 214183 CCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTT 214242 || |||| || || |||| || || |||||| | || ||||||| | | || Sbjct 2571 CCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCTTCATGGTC-TT 2513 Query 214243 TTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGAC 214301 | | ||| ||| | ||||||||| ||||| | | |||||| ||| |||||| Sbjct 2512 GCGTCCCTTGCCCATCTGTTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCA 2453 Query 214302 ATC-ATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGA 214360 || |||| ||||| ||| |||||||| | |||| |||| | ||| || | | || Sbjct 2452 GTCGGCCAAGCCCGGG-CACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGA 2394 Query 214361 CTCTTTTCATGAAAAGGTCGGAAGTCCAGA 214390 |||| |||||||| || |||| | |||||| Sbjct 2393 CTCTCTTCATGAAGAGATCGGGAATCCAGA 2364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203573347580590