Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq7566 158 1e-33
seq1773 134 1e-26
seq1878 122 8e-23
seq1577 96.9 3e-15
>seq7566
Length=2327
Score = 158 bits (174), Expect = 1e-33
Identities = 173/230 (75%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || ||| ||||||||| ||||| |||||||||
Sbjct 1463 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1404
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| |||||||||||||| ||||| |||| ||||| ||||| | ||
Sbjct 1403 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGG 1344
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| || ||| || | || | |||||| |||||||
Sbjct 1343 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGARGACTCCA 1286
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || |||||||| || ||||| ||||| |||||||||
Sbjct 1285 CCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 1236
>seq1773
Length=6176
Score = 134 bits (148), Expect = 1e-26
Identities = 141/184 (77%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||||||||| |||||||| |||||||| |||| ||||||||||||||||| || |
Sbjct 5341 CCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGA 5282
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| |||||| ||||| | ||| | | |||||||||| ||| || ||| || |
Sbjct 5281 TCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 5222
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || ||||||||||| ||||| ||
Sbjct 5221 CG--ATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 5164
Query 41851 GAAA 41854
||||
Sbjct 5163 GAAA 5160
>seq1878
Length=6026
Score = 122 bits (134), Expect = 8e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | || || || ||||| ||||||||| ||||| |||||
Sbjct 5705 GCCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 5764
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| || || |||||||| ||||| |||| ||||| ||||| | ||
Sbjct 5765 CAGTGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGG 5824
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||| ||| ||| || ||||| || | | | ||||| |||||||
Sbjct 5825 GATACCCTCCTTATCCTGGATCTTGGACTTCA-CGTTGTCGATCGTGTCCGAAGACTCCA 5883
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| ||| || || || || |||| ||||| ||||| ||||||||
Sbjct 5884 CCTCCAACGTAATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 5932
>seq1577
Length=6503
Score = 96.9 bits (106), Expect = 3e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| ||||| || || ||||| ||||| |||| || ||||||| ||||||||| |||
Sbjct 2079 CGCATCGCCCCCCGCTCCGGTCTCGCTGCCAAGAACTTTATCGACACGGGCGCCGGTGTC 2020
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|||||||||||||||||||| | |||| || | ||||||||||| | |||
Sbjct 2019 ATCGACGCCGACTACCGCGGCGAGGTCAAGGTCCTCCTCTTCAACCATGCCGA 1967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462244853982000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |