Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7566 158 1e-33 seq1773 134 1e-26 seq1878 122 8e-23 seq1577 96.9 3e-15 >seq7566 Length=2327 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| ||||||||| ||||| ||||||||| Sbjct 1463 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1404 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||| ||||| |||| ||||| ||||| | || Sbjct 1403 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGG 1344 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| || ||| || | || | |||||| ||||||| Sbjct 1343 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGARGACTCCA 1286 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || |||||||| || ||||| ||||| ||||||||| Sbjct 1285 CCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 1236 >seq1773 Length=6176 Score = 134 bits (148), Expect = 1e-26 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| |||||||| |||||||| |||| ||||||||||||||||| || | Sbjct 5341 CCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGA 5282 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| |||||| ||||| | ||| | | |||||||||| ||| || ||| || | Sbjct 5281 TCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 5222 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || ||||||||||| ||||| || Sbjct 5221 CG--ATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 5164 Query 41851 GAAA 41854 |||| Sbjct 5163 GAAA 5160 >seq1878 Length=6026 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || || ||||| ||||||||| ||||| ||||| Sbjct 5705 GCCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 5764 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || || |||||||| ||||| |||| ||||| ||||| | || Sbjct 5765 CAGTGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGG 5824 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| || ||||| || | | | ||||| ||||||| Sbjct 5825 GATACCCTCCTTATCCTGGATCTTGGACTTCA-CGTTGTCGATCGTGTCCGAAGACTCCA 5883 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||| || || || || |||| ||||| ||||| |||||||| Sbjct 5884 CCTCCAACGTAATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 5932 >seq1577 Length=6503 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || ||||| ||||| |||| || ||||||| ||||||||| ||| Sbjct 2079 CGCATCGCCCCCCGCTCCGGTCTCGCTGCCAAGAACTTTATCGACACGGGCGCCGGTGTC 2020 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 |||||||||||||||||||| | |||| || | ||||||||||| | ||| Sbjct 2019 ATCGACGCCGACTACCGCGGCGAGGTCAAGGTCCTCCTCTTCAACCATGCCGA 1967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462244853982000