Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2328 109 1e-18 >seq2328 Length=411296 Score = 109 bits (120), Expect = 1e-18 Identities = 274/408 (67%), Gaps = 10/408 (2%) Strand=Plus/Minus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| ||||| ||| ||| | |||||||| || | || |||||| ||| Sbjct 57241 CCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAGCTCA 57182 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355 || ||| || ||||||||||| || | | || | | || | || || | ||| || Sbjct 57181 TCTCTCGTGATGAGGGTCTCCA-CACCGACTTTGCCTGCCTCCTCTACTCTCACCTCAAG 57123 Query 230356 AACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGAAAACGAA 230412 ||| | ||| | || ||||| | | || ||| || || || | | ||| Sbjct 57122 AACCGCC--CCAG-CAAGCAGGTCATTGAGGACATTATTGTCGATGCTGTCAAGATCGAG 57066 Query 230413 AAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTAT 230471 |||||||| | || ||| | || || ||| || | ||||||||| | | || || Sbjct 57065 CAGGAGTTCCTGACCGAGGCTCTGCCTTG-CGCTCTGCTCGGCATGAACTCCAACCTGAT 57007 Query 230472 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGT 230531 | |||||||| || ||||| || ||||| | || ||||| ||||| | || || || Sbjct 57006 GAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAATGACAAGGT 56947 Query 230532 GTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591 ||||| ||| || || || | ||||||||| ||| || || || |||||||| Sbjct 56946 CTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCGGCAAGACCAA 56887 Query 230592 CTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||||| || |||||||| ||||| |||| | | ||||| ||||| Sbjct 56886 CTTCTTTGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGTTATGAA 56839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057784749440480