Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq2328 109 1e-18
>seq2328
Length=411296
Score = 109 bits (120), Expect = 1e-18
Identities = 274/408 (67%), Gaps = 10/408 (2%)
Strand=Plus/Minus
Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296
||||||| ||||| ||| ||| | |||||||| || | || |||||| |||
Sbjct 57241 CCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAGCTCA 57182
Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355
|| ||| || ||||||||||| || | | || | | || | || || | ||| ||
Sbjct 57181 TCTCTCGTGATGAGGGTCTCCA-CACCGACTTTGCCTGCCTCCTCTACTCTCACCTCAAG 57123
Query 230356 AACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGAAAACGAA 230412
||| | ||| | || ||||| | | || ||| || || || | | |||
Sbjct 57122 AACCGCC--CCAG-CAAGCAGGTCATTGAGGACATTATTGTCGATGCTGTCAAGATCGAG 57066
Query 230413 AAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTAT 230471
|||||||| | || ||| | || || ||| || | ||||||||| | | || ||
Sbjct 57065 CAGGAGTTCCTGACCGAGGCTCTGCCTTG-CGCTCTGCTCGGCATGAACTCCAACCTGAT 57007
Query 230472 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGT 230531
| |||||||| || ||||| || ||||| | || ||||| ||||| | || || ||
Sbjct 57006 GAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAATGACAAGGT 56947
Query 230532 GTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591
||||| ||| || || || | ||||||||| ||| || || || ||||||||
Sbjct 56946 CTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCGGCAAGACCAA 56887
Query 230592 CTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639
|||||| || |||||||| ||||| |||| | | ||||| |||||
Sbjct 56886 CTTCTTTGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGTTATGAA 56839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057784749440480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |