Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1484 141 1e-28 >seq1484 Length=366709 Score = 141 bits (156), Expect = 1e-28 Identities = 437/673 (65%), Gaps = 16/673 (2%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||| | | ||| || |||| | || || | ||||| Sbjct 274208 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATG 274267 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 ||||| || |||||||| ||||| | || || || | || | | ||||| || || Sbjct 274268 AAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCG 274327 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| ||||| | ||| | | | ||| | ||||| || || | ||| ||| Sbjct 274328 TGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATG 274387 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | || || |||||||| || ||||| || | ||| | ||| ||||| || | Sbjct 274388 GCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 274447 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| || | | ||| || || | ||| || || |||| |||||| || Sbjct 274448 ACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCG 274507 Query 54281 CTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 ||||||| || | || |||| |||| || || || ||||| || ||||| | | Sbjct 274508 GTGGCACGGATGCGATGAACGTTGA--GACCAATGCCACCGGCCATCTTGGAGATCATGG 274565 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 |||| || | || || ||||| ||||| ||| || ||| |||||| | || | Sbjct 274566 CGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGA 274625 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | || |||| ||| || || || || || || | || ||||||||||| | Sbjct 274626 AGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGG 274685 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT----AGCTGA--GTCTATATCCC 54512 | || |||| || | || ||||| || ||||| ||| | ||| | ||| Sbjct 274686 TGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCC 274745 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 | || || || ||||||||||| | ||||||||| ||||| || | |||||| Sbjct 274746 A------GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGC 274799 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632 || | || || | ||| ||| | ||||| || || || || ||||| | ||| | Sbjct 274800 CGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGA 274859 Query 54633 AGTCTCGTTCGTA 54645 |||| || || || Sbjct 274860 AGTCGCGGTCATA 274872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593700107278080