Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2328 185 9e-42 seq1255 138 1e-27 seq2064 132 5e-26 seq1448 114 1e-20 >seq2328 Length=411296 Score = 185 bits (204), Expect = 9e-42 Identities = 314/450 (70%), Gaps = 4/450 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040 |||||||||| ||||| ||| |||||| || | |||| | || |||||| | ||||| Sbjct 57352 AGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGAC-GAGAAGTCCTCCTTCGCCCAGCGC 57294 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || |||||||| ||||||||||| ||||||| || |||||| |||| || Sbjct 57293 CTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTC 57234 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| || || || ||||| || ||||| ||| ||||||||||||||| | Sbjct 57233 TGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 57174 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 || |||||||| || |||||||||||| | || | | || | | | || || Sbjct 57173 GATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTCTCACCTCAAGAACCGCCCC 57114 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| | | | | ||| || | ||| || ||| ||||||||| ||||| Sbjct 57113 AGCAAGCAGGTCATTGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTG 57054 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 ||||| || ||||| |||| |||||| || | || | | | |||| ||| ||||| Sbjct 57053 ACCGAGGCTCTGCC-TTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACAT 56995 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||||||||| ||| | || || | | || | | | |||| |||||| | | Sbjct 56994 TGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAATGACAAGGTCTACAAGTCTTC 56935 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC 117429 ||| ||| | ||||||||| | |||||| Sbjct 56934 CAATCCGTTCGACTTTATGGAGAACATCTC 56905 Score = 174 bits (192), Expect = 2e-38 Identities = 212/286 (74%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| ||||||| | || ||| Sbjct 57762 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 57703 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | || |||| | ||| | |||||| Sbjct 57702 TCCAAGGATCTCCA-CGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTC 57644 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 |||| | || ||||| ||||| || ||| ||||| ||||||||||| |||||||||| Sbjct 57643 GCACATCCTCGCCTTCTTCGCTGCTTCCGATGGCATTGTCAACGAGAACTTGGTCGAGCG 57584 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||||| |||||| ||||||| || |||||||| ||||| || ||| || Sbjct 57583 CTTCAGCGGCGAGGTCCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATGAT 57524 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || ||| ||||||||||| ||| Sbjct 57523 GGAGAACATCCACTCAGAGACCTACTCGTTGCTCATCGACACCTAC 57478 >seq1255 Length=235273 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | || Sbjct 166234 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 166293 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 166294 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 166353 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || |||| ||||||||| |||||||||| Sbjct 166354 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 166413 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| | || || || | || ||||| Sbjct 166414 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCGC 166449 >seq2064 Length=287033 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || || ||| | || |||||| | | Sbjct 186248 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 186307 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| || || ||||| |||||| | ||||| Sbjct 186308 GACACCATCGACAACG-TCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCA 186366 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||||| || |||| |||||||| ||||||||| Sbjct 186367 GCAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAA 186426 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| |||||||| | || |||||||| || Sbjct 186427 CATTCAGAAGGAATCTACTCTGCATCTCGT 186456 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || ||||| || ||||| ||||||||| | || ||||| || |||| | | | Sbjct 186030 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCG 186089 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| | ||| || |||| ||||| |||||||| ||| | |||||||| || | Sbjct 186090 ACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 186148 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || |||| |||||||| ||||||||||||||||||| Sbjct 186149 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAG 186208 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| | || || || | ||| |||| Sbjct 186209 GAGTCTACCCTCCACTTGGTGCTGCG 186234 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||| ||| | || ||||| || |||| | | | | |||| | ||| Sbjct 185758 TCACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACG-TGAAG 185816 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| ||||| |||||||| ||| | |||||||| || | |||| ||| || Sbjct 185817 TCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGT 185876 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| |||||||| |||||||||||||||||||||| | || || Sbjct 185877 AAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTT 185936 Query 40891 CA 40892 || Sbjct 185937 CA 185938 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || || ||||| | || ||||| | | Sbjct 186476 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 186535 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || |||| ||||| ||||| || || | || || Sbjct 186536 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCA 186594 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||| ||| |||| || | |||||| | | |||||||| Sbjct 186595 GCAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAA 186654 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | ||||| || || || Sbjct 186655 CATCCAGAAGGAGTCGACGCTTCACCTTGT 186684 >seq1448 Length=227951 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 172840 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 172899 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| | |||||||| || | Sbjct 172900 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 172959 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| ||||||||| ||||||||||||||||||| Sbjct 172960 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 173019 Query 40879 G 40879 | Sbjct 173020 G 173020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515200549064960