Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2064 131 1e-25 seq1255 118 9e-22 seq1448 91.5 1e-13 >seq2064 Length=287033 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || |||| ||||| |||||| | ||| || ||| Sbjct 186672 GTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCCTCCAACTGCTTGCCA 186613 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | ||||||||||||||||||||||| || ||||||||||| ||| || || Sbjct 186612 GCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 186553 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||||| ||||||||| | || | ||| || ||||||| ||| Sbjct 186552 ACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTCTTTCCGGTCAAAGTC 186493 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 186492 TTGACGAAGATCTGCAT 186476 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||||| |||||||| || || |||||||| ||| Sbjct 186248 TACCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 186189 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||||| ||||| || |||||| |||| | |||||||| ||||| | Sbjct 186188 ACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGG 186129 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| ||| || || || | |||| ||| || | | ||||| Sbjct 186128 GAATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGA 186069 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| | ||| | || |||||||| || || || || Sbjct 186068 CCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 186032 Score = 113 bits (124), Expect = 4e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || || |||||||| ||| || ||||| ||||| Sbjct 185944 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 185885 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| | |||||||| ||||| || |||||||||||||| | Sbjct 185884 AGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 185825 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | | ||||||||| | ||| | || ||| Sbjct 185824 ATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTG 185765 Query 118710 CCGGT 118714 ||||| Sbjct 185764 CCGGT 185760 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || ||||||||||| ||| || ||||| ||||| ||||| || ||| Sbjct 186444 GTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 186385 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| ||||| || || |||||||| ||| ||| || || Sbjct 186384 GCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTCGACTTG 186325 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | |||||||| | ||| | || ||||| || || || Sbjct 186324 ACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTC 186265 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 186264 TTAACGAAGATCTGCAT 186248 >seq1255 Length=235273 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || || |||||||| ||| | ||||| |||||| Sbjct 166442 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 166383 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||| || |||||||| || || || |||||||||||||| Sbjct 166382 AGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 166323 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | || || Sbjct 166322 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 166263 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || ||||||||| Sbjct 166262 CCCGTGAGGGTCTTGACGAAGATCTGCATG 166233 >seq1448 Length=227951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||||| ||||||||||| || || ||| |||| Sbjct 173018 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 172959 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| ||||| || |||||||||||||| || || || || | ||| Sbjct 172958 AAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 172899 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | || || || ||||| || || || ||| Sbjct 172898 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 172839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433815087956032