Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1430 107 4e-18 seq2377 84.2 5e-11 >seq1430 Length=116191 Score = 107 bits (118), Expect = 4e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059 ||| ||||| | || || |||| || || ||||| ||||||||||| || ||||| || Sbjct 81648 CCTCCCTCACCTCCTCCTCTACGGGCCCCCGGGAACGGGCAAGACGTCGACGATCCTCGC 81707 Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 || || ||| | | | |||| | ||||||| | || || |||||||| ||||| Sbjct 81708 CCTCGCGCGACGCATCTACGGCGCAGAGAACATGCGGCAGATGGTCCTCGAGCTCAACGC 81767 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171 || ||||| ||||| | |||||||| ||||| |||||||||| ||| || Sbjct 81768 CTCGGACGACCGCGGCATCGACGTCGTGCGCGAGCAGATCAAGACGTTCGCC 81819 >seq2377 Length=307564 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/158 (72%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 254213 CAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCG 254272 |||||||||||| || |||||||| |||| |||||| | | ||| ||| || ||||| Sbjct 37308 CAAGCTCGTGATTCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAAGCTCTCCG 37249 Query 254273 CCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTC 254332 |||||||||||||| ||||| |||||| || | | | |||||| | ||| Sbjct 37248 CCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACCA---GTC 37192 Query 254333 ---GAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCA 254367 |||||||||| |||||| || || ||||||| Sbjct 37191 CAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCA 37154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073726557897728