Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1430 107 4e-18
seq2377 84.2 5e-11
>seq1430
Length=116191
Score = 107 bits (118), Expect = 4e-18
Identities = 127/172 (74%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059
||| ||||| | || || |||| || || ||||| ||||||||||| || ||||| ||
Sbjct 81648 CCTCCCTCACCTCCTCCTCTACGGGCCCCCGGGAACGGGCAAGACGTCGACGATCCTCGC 81707
Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119
|| || ||| | | | |||| | ||||||| | || || |||||||| |||||
Sbjct 81708 CCTCGCGCGACGCATCTACGGCGCAGAGAACATGCGGCAGATGGTCCTCGAGCTCAACGC 81767
Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171
|| ||||| ||||| | |||||||| ||||| |||||||||| ||| ||
Sbjct 81768 CTCGGACGACCGCGGCATCGACGTCGTGCGCGAGCAGATCAAGACGTTCGCC 81819
>seq2377
Length=307564
Score = 84.2 bits (92), Expect = 5e-11
Identities = 114/158 (72%), Gaps = 6/158 (4%)
Strand=Plus/Minus
Query 254213 CAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCG 254272
|||||||||||| || |||||||| |||| |||||| | | ||| ||| || |||||
Sbjct 37308 CAAGCTCGTGATTCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAAGCTCTCCG 37249
Query 254273 CCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTC 254332
|||||||||||||| ||||| |||||| || | | | |||||| | |||
Sbjct 37248 CCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACCA---GTC 37192
Query 254333 ---GAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCA 254367
|||||||||| |||||| || || |||||||
Sbjct 37191 CAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCA 37154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073726557897728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |