Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1255 118 8e-22
seq2064 105 5e-18
seq1448 102 6e-17
>seq1255
Length=235273
Score = 118 bits (130), Expect = 8e-22
Identities = 157/217 (72%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| || ||| |||| ||
Sbjct 166442 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 166383
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||| ||||| |||| ||||| ||||| || || | ||||||||||||
Sbjct 166382 AGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 166323
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| || |||||
Sbjct 166322 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 166263
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343
||||| || ||||| || ||||| |||||| ||||||
Sbjct 166262 CCCGTGAGGGTCTTGACGAAGATCTGCATGATTGCCT 166226
>seq2064
Length=287033
Score = 105 bits (116), Expect = 5e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
||||||||||||||||||||| ||| ||| |||| || || || || || |||||
Sbjct 186438 TCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 186379
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
||||| ||||| |||||||| || | ||||||||| || ||| || ||| ||
Sbjct 186378 ATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTCGACTTGACGTTG 186319
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | | |||| || ||||| | |||||| |||||||| || || ||||| ||
Sbjct 186318 TCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACG 186259
Query 45326 AAGATTTGCAT 45336
||||| |||||
Sbjct 186258 AAGATCTGCAT 186248
Score = 105 bits (116), Expect = 5e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| ||||| ||||||||| ||||||||||| ||| ||| | || |||| ||
Sbjct 186679 GTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCCTCCAACTG 186620
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| || | ||||| || |||||||| | ||||||||||||| ||| ||
Sbjct 186619 CTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTT 186560
Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311
||| | || | || | ||||| | ||| ||||| | || |||||||| || |
Sbjct 186559 CGACTTGA-CGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTCTTTCCGG 186501
Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336
||| |||||| || ||||| |||||
Sbjct 186500 TCAAAGTCTTGACGAAGATCTGCAT 186476
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| ||| ||| |||| ||
Sbjct 186228 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 186169
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| ||||| ||||| |||||||| || | |||||||||||| |
Sbjct 186168 AGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 186109
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | || ||| ||||| | ||| || ||||||
Sbjct 186108 ATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTG 186049
Query 45308 CCCGTCAGAGTCTTCAC 45324
|| || || ||||| ||
Sbjct 186048 CCGGTAAGCGTCTTGAC 186032
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| ||| ||| |||| ||
Sbjct 185944 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 185885
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| ||||| ||||| |||||||| || | |||||||||||| |
Sbjct 185884 AGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 185825
Query 45248 ATTTT 45252
|| ||
Sbjct 185824 ATCTT 185820
>seq1448
Length=227951
Score = 102 bits (112), Expect = 6e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||| |||||||||||| || ||| |||| || || || || |||||||| |
Sbjct 173020 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 172961
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
|||| ||||| |||||||| || | |||||||||||| || || ||| ||
Sbjct 172960 TCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 172901
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | ||||| ||| ||||| | |||||| ||||| |||||||| |||||||| |
Sbjct 172900 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 172841
Query 45327 A 45327
|
Sbjct 172840 A 172840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395061255820816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |