Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1484 473 1e-128 seq2328 149 6e-31 seq2064 109 5e-19 seq1255 95.1 1e-14 >seq1484 Length=366709 Score = 473 bits (524), Expect = 1e-128 Identities = 1242/1885 (66%), Gaps = 32/1885 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| ||||| ||||| |||| || || | | ||||| || || |||||||| Sbjct 273016 CTGGTCGACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCC 273075 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||||||||| | |||||| || || || || || | ||| || |||| Sbjct 273076 CGTCTTCAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATTTTGCCCATGGTCGG 273135 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | |||| |||||| ||| || || || || || || ||||| || Sbjct 273136 GTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACCACGGTCGGCAGC 273195 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 ||| | | | |||||| || |||||||| || ||||||||||| | ||| ||| Sbjct 273196 CATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTC 273255 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404 || || ||| |||||| || ||||| | | ||||| || || || Sbjct 273256 AGTAGGGATGTTGGGGATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCTTCAT 273315 Query 22405 CGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTG 22464 | |||| ||||||||| ||| || | || || | || | |||| || || || Sbjct 273316 GGCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTG 273375 Query 22465 AAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 ||||| || | ||||| | || || ||||| |||||||| ||| | || || || | | Sbjct 273376 GAACTCACCAG-CAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACT 273434 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| |||| ||||| | ||| ||| |||||||| ||||| | || || |||| Sbjct 273435 CGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGT 273494 Query 22584 TTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA 22641 | | | ||||||| |||| | | || ||| || ||||||||| ||||| || Sbjct 273495 TGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTC--CCAGTCCCAGAGATCCGA 273552 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 ||| | ||||| |||||| ||||| || | | ||| || | ||| || || Sbjct 273553 GGGCTTGACATT---CCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGAACCCTC 273609 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCGCCGT 22760 |||||| | ||| || || | | ||| || | ||| | | | || ||| Sbjct 273610 GTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGCAGCGT 273668 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGTAC 22816 || || ||||| ||||| |||||||| | ||| || || ||| ||| | Sbjct 273669 GGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGAC----TCGAAG 273724 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 ||||| |||| || ||| || || || | |||||| || || | ||| || || ||| Sbjct 273725 GGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGG 273784 Query 22877 TTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 | || || || |||| ||| | | ||| || || ||||| | Sbjct 273785 TGACGCATGTTG----CTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGAT 273840 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 |||||||| ||| | | |||| | || | | |||||||| || Sbjct 273841 TCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGAC 273900 Query 22993 GCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCAC 23049 |||| ||||| ||||||| || | ||||| |||||| || ||||| || || || Sbjct 273901 GCCCTCGTTGTAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGAC 273960 Query 23050 CTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCC 23109 ||| || | |||||| | || || || || || ||| | || ||||| Sbjct 273961 CTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCC 274020 Query 23110 CAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCC 23169 | || |||||||||| || || ||| | |||||||||||||||| | || |||| Sbjct 274021 AAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCC 274080 Query 23170 CGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCAC 23229 |||||| ||| | ||||| ||| || ||| | |||| || | | ||| | Sbjct 274081 AGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATG-GTCTTGC 274139 Query 23230 GTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGT 23288 | ||| ||| | ||||||||| | |||||| || || || || | ||||| |||| Sbjct 274140 GACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGT 274199 Query 23289 CGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGC 23348 |||||||||| || | | | || ||||||||| |||| || || || || | Sbjct 274200 CGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCC 274259 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 |||| || || || || ||||| |||||| ||| || || ||||| || ||||||| Sbjct 274260 TCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCT 274319 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | |||||| |||||| || |||||| ||||| || || || || ||||| ||||| | Sbjct 274320 CCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAA 274379 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 |||| | ||| || || ||||| | || ||||| ||||| |||||||| || || |||| Sbjct 274380 GGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGT 274439 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 ||||| | || | ||||| || |||| |||||| || | ||| ||| || | | Sbjct 274440 TGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATAT 274499 Query 23589 TCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATA 23648 || || | || || | | ||||||| || ||| ||||| ||| || || || | Sbjct 274500 AGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGA 274559 Query 23649 TCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGA 23708 |||| ||||| || || ||||||||||| ||||| || |||||| || | ||| Sbjct 274560 TCATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGA 274619 Query 23709 CCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGG 23768 | | ||| || || |||| || || | || ||| | || ||| ||||| || | Sbjct 274620 CGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAG 274679 Query 23769 CGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCT 23828 |||| || ||| || ||||||| || ||||| || |||||| || |||| ||| | Sbjct 274680 CGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGT 274739 Query 23829 CTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGC 23888 | || ||||| | |||||| ||||| ||||||| || ||||||||| | | || Sbjct 274740 CACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGC 274799 Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948 ||| || |||| || ||||| | | || || || || || ||||| | ||||| | Sbjct 274800 CGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGA 274859 Query 23949 AGTCACGATCGTGCACTATGGCCGA 23973 |||| || || | || ||||| || Sbjct 274860 AGTCGCGGTCATAGACGATGGCAGA 274884 >seq2328 Length=411296 Score = 149 bits (164), Expect = 6e-31 Identities = 357/533 (67%), Gaps = 14/533 (3%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | | || ||||| | || | | || | |||||| || | Sbjct 57354 CAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAAGTCCTCCTTCGCCCAGCG 57295 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 || | || |||||||||||||| ||||| ||||| || ||| || | || || Sbjct 57294 CCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTT 57235 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| | ||||| || || || ||||| || ||||| || ||||||| | || || || Sbjct 57234 CTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 57175 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 || ||||||||||| || || ||||| ||||| | ||||||||| |||| |||| Sbjct 57174 TGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTCTCAC---CTCAA-GAACC 57119 Query 58154 GACGCGGGATCGCA--TCTT---GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | | | | | ||| || | ||||||||| ||| || ||| |||||| | ||| Sbjct 57118 GCCCCAGCA-AGCAGGTCATTGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAG 57060 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | ||||| || || || || ||||||| |||||| | ||||| || Sbjct 57059 TTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAG 57000 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACA 58326 ||||||||||| || || ||| | || ||| | | || | || | ||| |||| Sbjct 56999 TACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAATGACAAGGTC--TACA 56942 Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386 | | |||||||| || |||||| | ||||| || | |||||||| ||||| | Sbjct 56941 AGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCT 56882 Query 58387 TCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAG 58439 | || || ||| ||| || || || ||| || |||| | | | |||| Sbjct 56881 TTGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGTTATGAACAGCACCAAG 56829 >seq2064 Length=287033 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || || |||||||| | || || || | || Sbjct 186476 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 186535 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| || | || ||||| ||| Sbjct 186536 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 186595 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| |||||||| || || |||| || || ||| Sbjct 186596 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAAC 186655 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || ||||| ||||| || || || | ||| | || ||| Sbjct 186656 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGGT 186703 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || || ||| | || || ||| |||| Sbjct 186248 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 186307 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || || ||||| || | || ||||||||| Sbjct 186308 GACACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 186367 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||||||||| ||| | || ||| || || ||| || ||| Sbjct 186368 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 186427 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| ||||| ||||| || ||| | || | || |||| Sbjct 186428 ATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCGCCTCCGCGGAGGTA 186476 >seq1255 Length=235273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || || || || |||||| | || || || Sbjct 166229 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGT 166288 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | || || | Sbjct 166289 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTG 166348 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || |||||||| || ||| | || ||| || | ||| | Sbjct 166349 ACCAGCAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 166408 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || || |||||||| |||| || Sbjct 166409 ACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCCT 166445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750263256320