Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1484 129 7e-25 >seq1484 Length=366709 Score = 129 bits (142), Expect = 7e-25 Identities = 433/671 (65%), Gaps = 16/671 (2%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | | ||| || |||| | || || | ||||| || Sbjct 274210 AGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAA 274269 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||| || |||||||| ||||| | || || || | | | | ||||| || || Sbjct 274270 GAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTG 274329 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| ||||| | ||| | | | ||| | ||||| || || | ||| ||||| Sbjct 274330 GTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGC 274389 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | || || |||||||| || ||||| || | ||| | ||| ||||| || | || Sbjct 274390 GAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 274449 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| || | | |||||| || |||| || || |||| |||||| || | Sbjct 274450 ACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGT 274509 Query 63521 GGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 |||||| || | || |||| |||| || || || ||||| || ||||| | ||| Sbjct 274510 GGCACGGATGCGATGAACGTTGA--GACCAATGCCACCGGCCATCTTGGAGATCATGGCG 274567 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || || | ||||| ||||| || || || || || |||||| | || || Sbjct 274568 CAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAG 274627 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || |||| ||| ||| || || || || || | || ||||||||||| || Sbjct 274628 CAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTG 274687 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCCAT 63752 || |||| || | || ||||| || || || ||| | ||| | |||| Sbjct 274688 AAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA- 274746 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812 || || || ||||||||||| | ||||||||| ||||| || |||| ||| | Sbjct 274747 -----GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCG 274801 Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63872 | | || | | ||| ||| | ||||| || || || || ||||| | ||| ||| Sbjct 274802 TCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAG 274861 Query 63873 TCTCGTTCGTA 63883 || || || || Sbjct 274862 TCGCGGTCATA 274872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629794800602880