Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq1396 104 2e-17
>seq1396
Length=452294
Score = 104 bits (114), Expect = 2e-17
Identities = 377/582 (65%), Gaps = 60/582 (10%)
Strand=Plus/Plus
Query 20930 ATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGT 20989
||||||||||| | ||| || || || || |||| | |||| | | || || |||
Sbjct 169010 ATCAACGTGGTCGGCGTAGACATGTGCATCGCCCATGACGTGCGTCAGG-CTGCCAGGGA 169068
Query 20990 C-AGGCC-CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047
| ||| | | || || | || |||| | |||||| || |||||||| |||||||| ||
Sbjct 169069 CGAGGTCGCATG-CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAG 169127
Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG---------- 21097
|| || || ||||||||||| ||||| |||||||||||||||| |||
Sbjct 169128 GGCACGCCAAGGCCCATGTCACAGGACCGCTGGTACAGCTGGCAGCGCAGGTGGCCCTTT 169187
Query 21098 -----CTCCCC---------------CCGAGCC------------ACGTAAAACTGACAC 21125
||| || || ||| ||||| || || | |
Sbjct 169188 GGTTTCTCTCCGTCAGCGGGTGCAATGCGGGCCCGCGGGTAGGAGACGTAGAATTG-CGC 169246
Query 21126 AAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184
||| | ||| ||||| ||||| |||||| | |||||||||||||||||||||| |
Sbjct 169247 AAACATGTGGCAAGGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAG 169306
Query 21185 AACGATGCGCCGATCGTGGGGCCGCCTGTTAA----TTAGATCCACCACGTAACGCAGCT 21240
|| |||||| || |||| || | | || | | ||| ||| || || ||||
Sbjct 169307 AAGGATGCGGCGGTCGTACGGGTTCGTCTTCAGCTTGTGGAT-GACCTCG--GCG-AGCT 169362
Query 21241 GGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTC 21300
| || || ||||| ||| ||| | | | ||| | ||||| || ||||| ||||
Sbjct 169363 GATCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTC 169422
Query 21301 TCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCG 21360
||| ||||| ||||| || || || || ||||| | ||| | | | || || ||
Sbjct 169423 GCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCGCGATGCGAG-AGGCCAACG 169481
Query 21361 CCGCCAA-AAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCC-GCGGCGCGACAG 21418
| | ||| || | || || |||| ||||||| || || ||||| || ||| |||
Sbjct 169482 CTGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTAACGCCTGCCTCGC-TCAG 169540
Query 21419 TTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTC 21460
| || |||| ||| |||| || |||||||||| |||
Sbjct 169541 TGCGAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTC 169582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427760901646080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |