Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq2064 102 8e-17
seq1255 100 3e-16
>seq2064
Length=287033
Score = 102 bits (112), Expect = 8e-17
Identities = 155/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||| || ||||| | |||||||| || || ||||| || ||| |
Sbjct 186246 CCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 186187
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||| || ||||| |||||||| |||||| || ||||| ||||| ||
Sbjct 186186 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 186127
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716
||||| || ||||| ||| | || | || | | || | || |||| || ||| ||
Sbjct 186126 ATGCCCTCCTTGTCC-TGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGAC 186068
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754
||||| ||| | ||||||||||| | ||| || ||||
Sbjct 186067 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 186030
Score = 96.9 bits (106), Expect = 3e-15
Identities = 135/187 (72%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614
||| ||||||| |||||||| || || ||||| || ||| || |||| ||| ||
Sbjct 185945 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTC 185886
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
||||| |||||||| |||||| || ||||| ||||| || ||||| || ||||| |
Sbjct 185885 AAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-T 185827
Query 139675 GATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733
|| | || | || | | || | || |||| || ||| ||||||| ||| | ||||
Sbjct 185826 GAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCT 185767
Query 139734 TGCCGGT 139740
|||||||
Sbjct 185766 TGCCGGT 185760
Score = 96.9 bits (106), Expect = 3e-15
Identities = 164/235 (70%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
|| || || || | ||| | || | ||||| ||| ||||| || || ||||| || ||
Sbjct 186705 TGACCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCA 186646
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|||| |||| || || | ||| || ||||| | || ||||| ||||||||||||
Sbjct 186645 CTCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGA 186586
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713
|| || || || ||||| ||| | || | || | | || | ||||| | | |||
Sbjct 186585 GGAATACCCTCCTTGTC-CTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTC 186527
Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768
||||| | || | |||||| |||||||| || || ||||| || |||||| ||
Sbjct 186526 GACCTCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATACCT 186472
>seq1255
Length=235273
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || ||||||| |||||||| || || ||||| || ||| | |||| |
Sbjct 166448 CGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 166389
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| |||||||| || ||||| ||||||| || ||||| || || || ||||| || |||
Sbjct 166388 TCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 166329
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||||| | ||||||||||| ||| |
Sbjct 166328 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 166269
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || || | || || ||||| || |||||
Sbjct 166268 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 166234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496046042483200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |