Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 143 4e-29
>seq1484
Length=366709
Score = 143 bits (158), Expect = 4e-29
Identities = 620/969 (64%), Gaps = 26/969 (3%)
Strand=Plus/Plus
Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659
||||| || ||| |||| || ||||| || || || || ||||||| || | |||
Sbjct 273917 ACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGC-GCA 273975
Query 79660 -TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718
|| | || || || ||||||||||| | ||||| || | || | || ||
Sbjct 273976 GTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTT 274035
Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778
||||| ||| |||||||| || || ||||| || | ||||| || |||| |
Sbjct 274036 GCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGC 274095
Query 79779 TTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTC-- 79835
|| | || || | ||||| | || | ||||| || | |||| | ||| |
Sbjct 274096 CTCGAGGATGGCATACCAGA-GCTTCTGGGCCTTCATGGT---CTTGCGACCCTTGCCCA 274151
Query 79836 TCTT-TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAG 79894
||| ||||| | || || |||||||| || || | ||| | | ||||
Sbjct 274152 TCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAG 274211
Query 79895 GACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGA 79954
| || |||| || ||||| | | ||| || || | | || ||| | ||||| ||||
Sbjct 274212 GGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGA 274271
Query 79955 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 80014
| || |||||||| ||||| | || || || | || | | |||||| || || |
Sbjct 274272 GGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGT 274331
Query 80015 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 80074
|||| ||||| | ||| | | | ||| | ||||| || || | ||| ||||| |
Sbjct 274332 TCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGA 274391
Query 80075 TAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 80134
| | ||||| |||||||| || ||||| || | ||| | ||| ||||| || | || |
Sbjct 274392 AAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACAC 274451
Query 80135 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGG 80194
| ||| || | | ||| || || ||||| || || |||| |||||| || |||
Sbjct 274452 GGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGG 274511
Query 80195 CACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252
|||| || | || |||| |||| || || || ||||| || ||||| | |||||
Sbjct 274512 CACGGATGCGATGAACGTTGA--GACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 274569
Query 80253 TCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312
|| | || || ||||| ||||| || || || |||||| | || || ||
Sbjct 274570 AGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCA 274629
Query 80313 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372
|||| ||| || || || || || || | || ||||||||||| || ||
Sbjct 274630 AGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAA 274689
Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCTGA--TTCTATATCCCATTG 80426
|||| |||| || ||||| || || || ||| | || | ||||
Sbjct 274690 GAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA--- 274746
Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT 80486
|| || || ||||||||||| | ||||||||| ||||| || | |||||| |
Sbjct 274747 ---GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTC 274803
Query 80487 TATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546
| || | | ||| ||| | ||||| || || || || ||||| | ||| |||||
Sbjct 274804 AAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTC 274863
Query 80547 TCGTTCGTA 80555
|| || ||
Sbjct 274864 GCGGTCATA 274872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718242798669440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |