Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1484 143 4e-29 >seq1484 Length=366709 Score = 143 bits (158), Expect = 4e-29 Identities = 620/969 (64%), Gaps = 26/969 (3%) Strand=Plus/Plus Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 ||||| || ||| |||| || ||||| || || || || ||||||| || | ||| Sbjct 273917 ACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGC-GCA 273975 Query 79660 -TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 || | || || || ||||||||||| | ||||| || | || | || || Sbjct 273976 GTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTT 274035 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 ||||| ||| |||||||| || || ||||| || | ||||| || |||| | Sbjct 274036 GCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGC 274095 Query 79779 TTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTC-- 79835 || | || || | ||||| | || | ||||| || | |||| | ||| | Sbjct 274096 CTCGAGGATGGCATACCAGA-GCTTCTGGGCCTTCATGGT---CTTGCGACCCTTGCCCA 274151 Query 79836 TCTT-TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAG 79894 ||| ||||| | || || |||||||| || || | ||| | | |||| Sbjct 274152 TCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAG 274211 Query 79895 GACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGA 79954 | || |||| || ||||| | | ||| || || | | || ||| | ||||| |||| Sbjct 274212 GGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGA 274271 Query 79955 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 80014 | || |||||||| ||||| | || || || | || | | |||||| || || | Sbjct 274272 GGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGT 274331 Query 80015 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 80074 |||| ||||| | ||| | | | ||| | ||||| || || | ||| ||||| | Sbjct 274332 TCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGA 274391 Query 80075 TAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 80134 | | ||||| |||||||| || ||||| || | ||| | ||| ||||| || | || | Sbjct 274392 AAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACAC 274451 Query 80135 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGG 80194 | ||| || | | ||| || || ||||| || || |||| |||||| || ||| Sbjct 274452 GGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGG 274511 Query 80195 CACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252 |||| || | || |||| |||| || || || ||||| || ||||| | ||||| Sbjct 274512 CACGGATGCGATGAACGTTGA--GACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 274569 Query 80253 TCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312 || | || || ||||| ||||| || || || |||||| | || || || Sbjct 274570 AGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCA 274629 Query 80313 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 |||| ||| || || || || || || | || ||||||||||| || || Sbjct 274630 AGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAA 274689 Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCTGA--TTCTATATCCCATTG 80426 |||| |||| || ||||| || || || ||| | || | |||| Sbjct 274690 GAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA--- 274746 Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT 80486 || || || ||||||||||| | ||||||||| ||||| || | |||||| | Sbjct 274747 ---GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTC 274803 Query 80487 TATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546 | || | | ||| ||| | ||||| || || || || ||||| | ||| ||||| Sbjct 274804 AAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTC 274863 Query 80547 TCGTTCGTA 80555 || || || Sbjct 274864 GCGGTCATA 274872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718242798669440