Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1484 134 2e-26 >seq1484 Length=366709 Score = 134 bits (148), Expect = 2e-26 Identities = 435/672 (65%), Gaps = 14/672 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||| | | ||| || || | | | ||| | ||||| Sbjct 274208 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATG 274267 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 ||||| || |||||||| ||||| | || || || | || | | |||||| || || Sbjct 274268 AAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCG 274327 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| ||||| | ||| | | | ||| | ||||| || || | ||| ||| Sbjct 274328 TGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATG 274387 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | ||||| |||||||| || ||||| || | ||| | ||| ||||| || | Sbjct 274388 GCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 274447 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | | ||| || || | ||| || || |||| |||||| || Sbjct 274448 ACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCG 274507 Query 72274 CTGGCACGAATATTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332 ||||||| || | | | | | ||||| || || || ||||| || ||||| | || Sbjct 274508 GTGGCACGGATGC-GATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGC 274566 Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392 ||| || | || || ||||| ||||| ||| || ||| |||||| | || || Sbjct 274567 GCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAA 274626 Query 72393 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 72452 || |||| ||| || || || || || || | || ||||||||||| || Sbjct 274627 GCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGT 274686 Query 72453 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCTGA--TTCTATATCCCA 72506 || |||| |||| || ||||| || || || ||| | || | |||| Sbjct 274687 GAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA 274746 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 || || || ||||||||||| | ||| ||||| ||||| || | |||||| Sbjct 274747 ------GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCC 274800 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 | | || | | ||| ||| | ||||| || || || || ||||| | ||| || Sbjct 274801 GTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAA 274860 Query 72627 GTCTCGTTCGTA 72638 ||| || || || Sbjct 274861 GTCGCGGTCATA 274872 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | ||| ||||||||||| | | || || | ||| || || ||||||||| Sbjct 273014 TCCTGGTCGACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATG 273073 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || |||||||| |||| ||| || ||||| || || | |||| | | Sbjct 273074 CCCGTCTTCAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATTTTGCCCATGGTC 273133 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || |||||||| || | |||||| || || |||||||| || | ||| ||| Sbjct 273134 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACCACGGTCGGCA 273193 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015 ||||| | | || || || | |||||||||| ||| || || Sbjct 273194 GCCATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTA 273240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671114904760960