Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 134 2e-26
>seq1484
Length=366709
Score = 134 bits (148), Expect = 2e-26
Identities = 435/672 (65%), Gaps = 14/672 (2%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| || || || || ||||| | | ||| || || | | | ||| | |||||
Sbjct 274208 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATG 274267
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
||||| || |||||||| ||||| | || || || | || | | |||||| || ||
Sbjct 274268 AAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCG 274327
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| ||||| | ||| | | | ||| | ||||| || || | ||| |||
Sbjct 274328 TGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATG 274387
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | | ||||| |||||||| || ||||| || | ||| | ||| ||||| || |
Sbjct 274388 GCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 274447
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | | ||| || | | ||| || || | ||| || || |||| |||||| ||
Sbjct 274448 ACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCG 274507
Query 72274 CTGGCACGAATATTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332
||||||| || | | | | | ||||| || || || ||||| || ||||| | ||
Sbjct 274508 GTGGCACGGATGC-GATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGC 274566
Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392
||| || | || || ||||| ||||| ||| || ||| |||||| | || ||
Sbjct 274567 GCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAA 274626
Query 72393 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 72452
|| |||| ||| || || || || || || | || ||||||||||| ||
Sbjct 274627 GCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGT 274686
Query 72453 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCTGA--TTCTATATCCCA 72506
|| |||| |||| || ||||| || || || ||| | || | ||||
Sbjct 274687 GAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA 274746
Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566
|| || || ||||||||||| | ||| ||||| ||||| || | ||||||
Sbjct 274747 ------GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCC 274800
Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626
| | || | | ||| ||| | ||||| || || || || ||||| | ||| ||
Sbjct 274801 GTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAA 274860
Query 72627 GTCTCGTTCGTA 72638
||| || || ||
Sbjct 274861 GTCGCGGTCATA 274872
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | ||| ||||||||||| | | || || | ||| || || |||||||||
Sbjct 273014 TCCTGGTCGACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATG 273073
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908
|| || || |||||||| |||| ||| || ||||| || || | |||| | |
Sbjct 273074 CCCGTCTTCAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATTTTGCCCATGGTC 273133
Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968
|| || |||||||| || | |||||| || || |||||||| || | ||| |||
Sbjct 273134 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACCACGGTCGGCA 273193
Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015
||||| | | || || || | |||||||||| ||| || ||
Sbjct 273194 GCCATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTA 273240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671114904760960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |