Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq2064 89.7 5e-13
>seq2064
Length=287033
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014
|| ||||| || | ||| | || | |||| || || || || || |||||||| ||
Sbjct 186705 TGACCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCA 186646
Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074
|||| |||| || || | || || ||||| | || ||||| ||||||||||||
Sbjct 186645 CTCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGA 186586
Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134
|| || || || ||||| ||| || || | | || | |||||||| | ||
Sbjct 186585 GGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCG 186526
Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
|| || | || | |||||| |||||||| || || ||||| || |||||| ||
Sbjct 186525 ACCTCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATACCT 186472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506996046078720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |