Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1484 178 2e-39 seq2328 129 9e-25 >seq1484 Length=366709 Score = 178 bits (196), Expect = 2e-39 Identities = 349/511 (68%), Gaps = 10/511 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| ||||| || || ||| | ||| ||||| | || ||||||||||| || Sbjct 274419 CAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCCGAT 274360 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||||| | || ||||||| ||| ||| || |||| || ||| | ||| Sbjct 274359 GTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCCGTGAC 274300 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052 | || || |||||| | || || | ||||||||| | || || |||| | Sbjct 274299 CTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGAGAAGAACGGGG-- 274242 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| || || || || ||| |||| |||| ||||| ||| Sbjct 274241 -ACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGGAG 274183 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 || |||||| |||| | |||||||| |||| | || |||| | || | Sbjct 274182 TTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCA--TGAAGG 274125 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| | |||||| | ||| ||| |||||||| | || | ||| | Sbjct 274124 CCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCTTTCATGC 274065 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||||| ||| || ||||| |||||||| || | ||||||||| ||| Sbjct 274064 TCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATCCGCAGCT 274005 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTC 97350 |||| || |||||||| || | |||||| | | || || ||| || || ||| | Sbjct 274004 CCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTCGCGGTCTGCAACC 273945 Query 97351 TGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 |||| ||| || |||||| ||||| || Sbjct 273944 TGGCCTCGCTCGCCTTGCCCACCTTTGTTGA 273914 >seq2328 Length=411296 Score = 129 bits (142), Expect = 9e-25 Identities = 315/474 (66%), Gaps = 25/474 (5%) Strand=Plus/Minus Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 ||||||| ||||| ||||| || | |||| | | || || || ||||||||||| || Sbjct 57330 GTGGATCAGCGACGAGAAGTCCTCCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGA 57271 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||| |||||||| ||| || || ||||||| |||||||||||||| || || || Sbjct 57270 GGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTAT 57211 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| || ||||| | |||||| | || ||||| || ||||| || ||| ||||| Sbjct 57210 GCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTT 57151 Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGT 125629 |||| || || | ||| | | | | || | | ||||| | |||| Sbjct 57150 TGCCTGCCTCCT------CTACTCT---CACCTCAAGAACCGCCCCAGC---AAGCAGGT 57103 Query 125630 CAT---CAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCT 125686 ||| ||||| | |||||| || | ||| || || ||||| || ||||| | || Sbjct 57102 CATTGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCT 57043 Query 125687 ACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGC 125746 || | || | |||||||||| ||| || ||| ||||||| ||||| || || Sbjct 57042 GCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGC 56983 Query 125747 AGATCGTCTACTGTACGAGTTG--ATTGGC---CGCAAGATTTACAACGCCAAGAATCCC 125801 || ||||| || |||| ||||| |||| | ||||| | ||||| Sbjct 56982 TGACCGTCTCTTG-----GTTGCTCTTGGCAATGACAAGGTCTACAAGTCTTCCAATCCG 56928 Query 125802 TTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || || || ||| | ||| || || | || ||||||||||| || |||||| Sbjct 56927 TTCGACTTTATGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCTTTGAGAAG 56874 Score = 109 bits (120), Expect = 8e-19 Identities = 201/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| ||||||| || ||||| | ||| ||| | |||||| Sbjct 57762 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 57703 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||| ||| | || | | || || |||| | || || || Sbjct 57702 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GAGGATGAGAAGTACTTCATCTC 57644 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 |||||| | |||||||| || | |||||||| || |||||||| || || | || Sbjct 57643 GCACATCCTCGCCTTCTTCGCTGCTTCCGATGGCATTGTCAACGAGAACTTGGTCGAGCG 57584 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||| ||| | ||| | || |||| ||||| || || |||||||||||| Sbjct 57583 CTTCAGCGGCGAG--GTCCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATG 57526 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || |||||| | ||||| || | ||||| || || |||| ||||| Sbjct 57525 ATGGAGAACATCCACTCAGAGACCTACTCGTTGCTCATCGACACCTACAT 57476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741032373656960