Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 178 2e-39
seq2328 129 9e-25
>seq1484
Length=366709
Score = 178 bits (196), Expect = 2e-39
Identities = 349/511 (68%), Gaps = 10/511 (2%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| ||||| || || ||| | ||| ||||| | || ||||||||||| ||
Sbjct 274419 CAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCCGAT 274360
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || ||||| | || ||||||| ||| ||| || |||| || ||| | |||
Sbjct 274359 GTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCCGTGAC 274300
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052
| || || |||||| | || || | ||||||||| | || || |||| |
Sbjct 274299 CTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGAGAAGAACGGGG-- 274242
Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112
|||||| || ||||||||| || || || || ||| |||| |||| ||||| |||
Sbjct 274241 -ACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGGAG 274183
Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171
|| |||||| |||| | |||||||| |||| | || |||| | || |
Sbjct 274182 TTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCA--TGAAGG 274125
Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230
| |||| || ||| | |||||| | ||| ||| |||||||| | || | ||| |
Sbjct 274124 CCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCTTTCATGC 274065
Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290
||||||||||| ||| || ||||| |||||||| || | ||||||||| |||
Sbjct 274064 TCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATCCGCAGCT 274005
Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTC 97350
|||| || |||||||| || | |||||| | | || || ||| || || ||| |
Sbjct 274004 CCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTCGCGGTCTGCAACC 273945
Query 97351 TGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381
|||| ||| || |||||| ||||| ||
Sbjct 273944 TGGCCTCGCTCGCCTTGCCCACCTTTGTTGA 273914
>seq2328
Length=411296
Score = 129 bits (142), Expect = 9e-25
Identities = 315/474 (66%), Gaps = 25/474 (5%)
Strand=Plus/Minus
Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449
||||||| ||||| ||||| || | |||| | | || || || ||||||||||| ||
Sbjct 57330 GTGGATCAGCGACGAGAAGTCCTCCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGA 57271
Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509
||| |||||||| ||| || || ||||||| |||||||||||||| || || ||
Sbjct 57270 GGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTAT 57211
Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569
||| || ||||| | |||||| | || ||||| || ||||| || ||| |||||
Sbjct 57210 GCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTT 57151
Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGT 125629
|||| || || | ||| | | | | || | | ||||| | ||||
Sbjct 57150 TGCCTGCCTCCT------CTACTCT---CACCTCAAGAACCGCCCCAGC---AAGCAGGT 57103
Query 125630 CAT---CAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCT 125686
||| ||||| | |||||| || | ||| || || ||||| || ||||| | ||
Sbjct 57102 CATTGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCT 57043
Query 125687 ACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGC 125746
|| | || | |||||||||| ||| || ||| ||||||| ||||| || ||
Sbjct 57042 GCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGC 56983
Query 125747 AGATCGTCTACTGTACGAGTTG--ATTGGC---CGCAAGATTTACAACGCCAAGAATCCC 125801
|| ||||| || |||| ||||| |||| | ||||| | |||||
Sbjct 56982 TGACCGTCTCTTG-----GTTGCTCTTGGCAATGACAAGGTCTACAAGTCTTCCAATCCG 56928
Query 125802 TTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
|| || || ||| | ||| || || | || ||||||||||| || ||||||
Sbjct 56927 TTCGACTTTATGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCTTTGAGAAG 56874
Score = 109 bits (120), Expect = 8e-19
Identities = 201/290 (69%), Gaps = 6/290 (2%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| |||||| ||||||| || ||||| | ||| ||| | ||||||
Sbjct 57762 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 57703
Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137
|||||||| || |||| ||| | || | | || || |||| | || || ||
Sbjct 57702 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GAGGATGAGAAGTACTTCATCTC 57644
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197
|||||| | |||||||| || | |||||||| || |||||||| || || | ||
Sbjct 57643 GCACATCCTCGCCTTCTTCGCTGCTTCCGATGGCATTGTCAACGAGAACTTGGTCGAGCG 57584
Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255
||| ||| | ||| | || |||| ||||| || || ||||||||||||
Sbjct 57583 CTTCAGCGGCGAG--GTCCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATG 57526
Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
|| |||||| | ||||| || | ||||| || || |||| |||||
Sbjct 57525 ATGGAGAACATCCACTCAGAGACCTACTCGTTGCTCATCGACACCTACAT 57476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741032373656960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |