Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1484 141 1e-28 >seq1484 Length=366709 Score = 141 bits (156), Expect = 1e-28 Identities = 437/673 (65%), Gaps = 16/673 (2%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||| | | ||| || |||| | || || | ||||| Sbjct 274208 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATG 274267 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 ||||| || |||||||| ||||| | || || || | || | | ||||| || || Sbjct 274268 AAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCG 274327 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| ||||| | ||| | | | ||| | ||||| || || | ||| ||| Sbjct 274328 TGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATG 274387 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | | || || |||||||| || ||||| || | ||| | ||| ||||| || | Sbjct 274388 GCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 274447 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| || | | |||||| || |||| || || |||| |||||| || Sbjct 274448 ACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCG 274507 Query 63468 CTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 ||||||| || | || |||| |||| || || || ||||| || ||||| | | Sbjct 274508 GTGGCACGGATGCGATGAACGTTGA--GACCAATGCCACCGGCCATCTTGGAGATCATGG 274565 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 |||| || | ||||| ||||||||||| || || || |||||| | || | Sbjct 274566 CGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGA 274625 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 | || |||| ||| || || || || || || | || ||||||||||| | Sbjct 274626 AGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGG 274685 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCC 63699 | || |||| || | || ||||| || || || ||| | ||| | ||| Sbjct 274686 TGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCC 274745 Query 63700 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63759 | || || || ||||||||||| | ||||||||| ||||| || | |||||| Sbjct 274746 A------GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGC 274799 Query 63760 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63819 || | || | | ||| ||| | ||||| || || || || ||||| | ||| | Sbjct 274800 CGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGA 274859 Query 63820 AGTCTCGTTCGTA 63832 |||| || || || Sbjct 274860 AGTCGCGGTCATA 274872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622924649311360