Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1484 342 1e-88 >seq1484 Length=366709 Score = 342 bits (378), Expect = 1e-88 Identities = 1165/1791 (65%), Gaps = 42/1791 (2%) Strand=Plus/Minus Query 363390 TTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTG 363448 |||||| | ||||| |||||| ||| ||||| ||| | | || | |||| | Sbjct 274846 TTTCGGCTTCAAGACCTTGGAGAGATCATACCTC-CTCAAGCTTGACGGCAAGATTGCCG 274788 Query 363449 AACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATG 363508 | | || ||||| ||| | |||||||| || |||||||| | || ||||| Sbjct 274787 AGAGACCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGC 274728 Query 363509 CCGCGATTGAAACATATAAGCTTCTAA-GTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 || || ||||| || || || | | || | | ||||| ||||| | || ||| Sbjct 274727 GCGTCATCGAAACCTACAACCTGATGTCGAGCAAAT-TCTTCACCCACGCTTCTCCCACA 274669 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 | | ||| ||||| || | | | | ||| |||| |||||||| || | | |||||| Sbjct 274668 CTCTTCAACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAG 274609 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 || || || || |||||||||| ||||| || |||| ||| || | || ||||||| Sbjct 274608 GAGGACTCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGATCTCCAAGATG 274549 Query 363688 GCAGGCGGAATTGGTGT-ATCGATC--CACAATGTTCGTGC-ACAGAACAGTTACATTCG 363743 || || || |||||| | | || || | || | ||||| || | | || ||| Sbjct 274548 GCCGGTGGCATTGGTCTCAACGTTCATCGCA---TCCGTGCCACCGG-CTCCTATATTGC 274493 Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 |||||| || |||||| || | || |||||||| ||||| || |||| ||||| Sbjct 274492 CGGCACTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGC 274433 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | ||||||||||||||||| || ||| || || || || || || || ||||| Sbjct 274432 TCGCTACGTCGACCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCC 274373 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 | || |||||| | || || || | || || || || ||| || || ||||| | Sbjct 274372 TTGGCACGCCGATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGT 274313 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 ||||| ||||| || ||| || || ||| || | |||| || |||||| | || || Sbjct 274312 TCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGA 274253 Query 363984 G--GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 | | | | | | ||| | ||| | ||||| |||| || || || || |||| Sbjct 274252 GAAGAACG--GGGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGC 274195 Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101 | || || || | | || | ||||| ||||| || | ||| |||| ||| ||| Sbjct 274194 TACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAG 274135 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 || || || |||||||| |||| ||||||| | || | |||| ||||| || | | Sbjct 274134 ACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCA-A 274076 Query 364162 CCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220 |||| | ||| | ||||| ||| | |||||||||| ||||||| || ||||||| || Sbjct 274075 CCCTTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCAC 274016 Query 364221 AATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 | || |||| |||||| || || ||||| || || ||| ||| || || ||| | Sbjct 274015 CA-TCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTCG 273957 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTT 364333 | || || ||||| || ||| |||| | || | ||||| || || || | Sbjct 273956 CGGTCTGCAACCTGGCCTCGCTCGCCTTGCCCACCTTTGTTGACTACAACGAGGGCGTCT 273897 Query 364334 TTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTA 364393 ||| |||| | || | || || ||| | || | |||| || ||| | | Sbjct 273896 ACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGAATCA 273837 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCG 364448 ||||| || | || || ||| || || || ||| || |||||||| || Sbjct 273836 TCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGC-----AACATGCGTCACCG 273782 Query 364449 CCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATT 364508 ||| |||||||| ||||| ||||| || ||||| | || || || ||| | || Sbjct 273781 CCCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTGCGCATGCCCTT 273722 Query 364509 TGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGC 364568 || || ||||| ||||| | ||||| ||| |||||||||| || || || || || Sbjct 273721 CGAGTCTCCTGAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTACCACGCTGC 273662 Query 364569 AATGACTGCTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGT 364627 | || ||| ||| | |||| || |||| ||| || || ||||| | Sbjct 273661 CCTCACCATGTCG-GTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTT 273603 Query 364628 CCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGAT 364687 |||| | || ||||| | |||||| || | |||||||||| ||| || | | | Sbjct 273602 CCCCCGTCTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCGGATCTCT 273543 Query 364688 GGAACTGGGATACGCTACGTTCCA--ACGTTAAGAAGCATGGTACTCGCAACTCCCTCGT 364745 || |||||| ||||| | | | | ||| |||| ||| |||||||| || | Sbjct 273542 GGGACTGGG--ACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTTCT 273485 Query 364746 TACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGA 364805 ||||||||||| || ||| || | |||||| | || |||||||||||||| || Sbjct 273484 CGTCGCGCCCATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGA 273425 Query 364806 ACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAA 364865 || | || ||| | || || || |||||| | || || || | ||| || || Sbjct 273424 GCCCTACACCTCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTTCCAGGTCGTCAA 273365 Query 364866 TAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTA 364925 | || | ||||| ||| |||| || ||||| || |||||||||| Sbjct 273364 CCCTTGGCTCTTGAAGGACCTTGTCGACATGGGTTTGTGGTCCGATGCCATGAAGAACCG 273305 Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCC 364985 ||||| |||| || ||||| | |||||||| || | || || | ||| | Sbjct 273304 CATCATTGCCGAGAACGGTTCGATCCAGAACATCCCCAACATCCCTACTGAGGTCAAGGC 273245 Query 364986 TATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCG 365045 | ||||| || || |||||||| || ||| || || | | ||||| ||||| || Sbjct 273244 CCTGTACAAGACTGTTTGGGAAATCTCTCAGCGTACCGTCGTGCAGATGGCTGCCGACCG 273185 Query 365046 CGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGC 365105 ||||| || || ||| |||||| | ||| | ||||| | || ||| | Sbjct 273184 TGGTGCCTTCATTGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGG 273125 Query 365106 CAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||| | || |||||| ||| ||| ||||| |||||| ||||| || Sbjct 273124 CAAAATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCTGAAGACGGG 273074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303305239064672