Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 342 1e-88
>seq1484
Length=366709
Score = 342 bits (378), Expect = 1e-88
Identities = 1165/1791 (65%), Gaps = 42/1791 (2%)
Strand=Plus/Minus
Query 363390 TTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTG 363448
|||||| | ||||| |||||| ||| ||||| ||| | | || | |||| |
Sbjct 274846 TTTCGGCTTCAAGACCTTGGAGAGATCATACCTC-CTCAAGCTTGACGGCAAGATTGCCG 274788
Query 363449 AACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATG 363508
| | || ||||| ||| | |||||||| || |||||||| | || |||||
Sbjct 274787 AGAGACCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGC 274728
Query 363509 CCGCGATTGAAACATATAAGCTTCTAA-GTGCTCGTGTATTCACGCACGCCACGCCAACA 363567
|| || ||||| || || || | | || | | ||||| ||||| | || |||
Sbjct 274727 GCGTCATCGAAACCTACAACCTGATGTCGAGCAAAT-TCTTCACCCACGCTTCTCCCACA 274669
Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627
| | ||| ||||| || | | | | ||| |||| |||||||| || | | ||||||
Sbjct 274668 CTCTTCAACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAG 274609
Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687
|| || || || |||||||||| ||||| || |||| ||| || | || |||||||
Sbjct 274608 GAGGACTCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGATCTCCAAGATG 274549
Query 363688 GCAGGCGGAATTGGTGT-ATCGATC--CACAATGTTCGTGC-ACAGAACAGTTACATTCG 363743
|| || || |||||| | | || || | || | ||||| || | | || |||
Sbjct 274548 GCCGGTGGCATTGGTCTCAACGTTCATCGCA---TCCGTGCCACCGG-CTCCTATATTGC 274493
Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803
|||||| || |||||| || | || |||||||| ||||| || |||| |||||
Sbjct 274492 CGGCACTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGC 274433
Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863
| ||||||||||||||||| || ||| || || || || || || || |||||
Sbjct 274432 TCGCTACGTCGACCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCC 274373
Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923
| || |||||| | || || || | || || || || ||| || || ||||| |
Sbjct 274372 TTGGCACGCCGATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGT 274313
Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983
||||| ||||| || ||| || || ||| || | |||| || |||||| | || ||
Sbjct 274312 TCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGA 274253
Query 363984 G--GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041
| | | | | | ||| | ||| | ||||| |||| || || || || ||||
Sbjct 274252 GAAGAACG--GGGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGC 274195
Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101
| || || || | | || | ||||| ||||| || | ||| |||| ||| |||
Sbjct 274194 TACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAG 274135
Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161
|| || || |||||||| |||| ||||||| | || | |||| ||||| || | |
Sbjct 274134 ACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCA-A 274076
Query 364162 CCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220
|||| | ||| | ||||| ||| | |||||||||| ||||||| || ||||||| ||
Sbjct 274075 CCCTTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCAC 274016
Query 364221 AATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279
| || |||| |||||| || || ||||| || || ||| ||| || || ||| |
Sbjct 274015 CA-TCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTCG 273957
Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTT 364333
| || || ||||| || ||| |||| | || | ||||| || || || |
Sbjct 273956 CGGTCTGCAACCTGGCCTCGCTCGCCTTGCCCACCTTTGTTGACTACAACGAGGGCGTCT 273897
Query 364334 TTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTA 364393
||| |||| | || | || || ||| | || | |||| || ||| | |
Sbjct 273896 ACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGAATCA 273837
Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCG 364448
||||| || | || || ||| || || || ||| || |||||||| ||
Sbjct 273836 TCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGC-----AACATGCGTCACCG 273782
Query 364449 CCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATT 364508
||| |||||||| ||||| ||||| || ||||| | || || || ||| | ||
Sbjct 273781 CCCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTGCGCATGCCCTT 273722
Query 364509 TGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGC 364568
|| || ||||| ||||| | ||||| ||| |||||||||| || || || || ||
Sbjct 273721 CGAGTCTCCTGAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTACCACGCTGC 273662
Query 364569 AATGACTGCTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGT 364627
| || ||| ||| | |||| || |||| ||| || || ||||| |
Sbjct 273661 CCTCACCATGTCG-GTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTT 273603
Query 364628 CCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGAT 364687
|||| | || ||||| | |||||| || | |||||||||| ||| || | | |
Sbjct 273602 CCCCCGTCTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCGGATCTCT 273543
Query 364688 GGAACTGGGATACGCTACGTTCCA--ACGTTAAGAAGCATGGTACTCGCAACTCCCTCGT 364745
|| |||||| ||||| | | | | ||| |||| ||| |||||||| || |
Sbjct 273542 GGGACTGGG--ACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTTCT 273485
Query 364746 TACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGA 364805
||||||||||| || ||| || | |||||| | || |||||||||||||| ||
Sbjct 273484 CGTCGCGCCCATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGA 273425
Query 364806 ACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAA 364865
|| | || ||| | || || || |||||| | || || || | ||| || ||
Sbjct 273424 GCCCTACACCTCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTTCCAGGTCGTCAA 273365
Query 364866 TAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTA 364925
| || | ||||| ||| |||| || ||||| || ||||||||||
Sbjct 273364 CCCTTGGCTCTTGAAGGACCTTGTCGACATGGGTTTGTGGTCCGATGCCATGAAGAACCG 273305
Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCC 364985
||||| |||| || ||||| | |||||||| || | || || | ||| |
Sbjct 273304 CATCATTGCCGAGAACGGTTCGATCCAGAACATCCCCAACATCCCTACTGAGGTCAAGGC 273245
Query 364986 TATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCG 365045
| ||||| || || |||||||| || ||| || || | | ||||| ||||| ||
Sbjct 273244 CCTGTACAAGACTGTTTGGGAAATCTCTCAGCGTACCGTCGTGCAGATGGCTGCCGACCG 273185
Query 365046 CGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGC 365105
||||| || || ||| |||||| | ||| | ||||| | || ||| |
Sbjct 273184 TGGTGCCTTCATTGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGG 273125
Query 365106 CAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
||| | || |||||| ||| ||| ||||| |||||| ||||| ||
Sbjct 273124 CAAAATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCTGAAGACGGG 273074
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303305239064672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |