Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1484 181 1e-40 seq2064 131 2e-25 seq1255 120 3e-22 seq1448 107 2e-18 >seq1484 Length=366709 Score = 181 bits (200), Expect = 1e-40 Identities = 965/1513 (64%), Gaps = 49/1513 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| ||||| || || | ||||| ||| || | ||| || ||| |||| Sbjct 273365 TTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 273424 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| ||||||| ||||||| ||| || | ||| | || || |||||| ||| || Sbjct 273425 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACG 273484 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTT--TAGCGTACCCCAATCCC 145235 | | || ||||| | ||||||| |||||| | ||||| ||||| |||| |||| Sbjct 273485 AGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGT--CCCAGTCCC 273542 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || | ||| | || | ||||||||||||||| | ||||||| | ||||| Sbjct 273543 AGAGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGG 273602 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 || | | | ||| |||| ||||| |||| || || | | ||| Sbjct 273603 AACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GC-ACCGACATGGTGAG 273660 Query 145356 CGC--CGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 || || || || ||||| || | | |||| || || ||| ||| Sbjct 273661 GGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGACTC 273720 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | | ||||||||||| | || ||||| || || ||||| | || | || ||||| Sbjct 273721 GAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGGG 273780 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAAT 145533 || || ||||||||| | | ||| || | ||| || | || |||||| || Sbjct 273781 GCGGTGACGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGAT 273840 Query 145534 TTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCG 145593 | | |||| ||| || || || |||| || | | | | ||| | ||||| | Sbjct 273841 TCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGAC 273900 Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 |||||| | | ||| || | | ||||| ||| |||| || || || || Sbjct 273901 GCCCTCGTTGTAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGAC 273960 Query 145654 CTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 ||| || |||| ||| ||| | | |||||| | ||| | ||| | |||||| | Sbjct 273961 CTCATCAGGCG-CGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGC 274019 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 | || || | ||| || || || | |||| || ||||||||||||||| | || || Sbjct 274020 CAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGC 274079 Query 145773 CAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCACCTGCT 145829 ||||||| ||| | ||| | ||| | | | | || | ||| || || || | Sbjct 274080 CAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGC---TTCTGGGCCTTCA--TGGT 274134 Query 145830 GCTGGTAGC---GGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGT 145886 || | | | || ||| | ||||| ||| ||| | |||| ||| | |||| Sbjct 274135 CTTGCGACCCTTGCCCATCTGC-TCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGT 274193 Query 145887 AGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGT 145946 |||| |||| |||||| || |||| |||||| ||||| || | ||| | ||||| | Sbjct 274194 AGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCT 274253 Query 145947 TGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGC 146006 || | || ||| || | || || | ||| || ||| | | ||| || || | Sbjct 274254 CTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGC---AC 274310 Query 146007 AATCCTCAGC--ACCCATGTTTC--GCTTCAAAT-TAAGCACACTATAGATGTCCGCGTG 146061 | |||| | || || ||| || || || ||| | | | ||| || ||||| Sbjct 274311 GAACCTCCTCCTTGCCGTGGTTCTTGC-GCAGATCCAAGAAGTCGA-AGACATCGGCGTG 274368 Query 146062 CCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGT---TTGCCACCCTGGTCCACGTG 146118 ||| || |||| |||| ||||| || || ||| |||||||||||||| |||| Sbjct 274369 CCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTA 274428 Query 146119 ACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT 146178 || | ||||||| ||||| || | |||||| |||| ||| | | ||||| || Sbjct 274429 GCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGT 274488 Query 146179 AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCC 146238 | || || |||| || || | || |||||| || | || | || ||| | Sbjct 274489 GCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGC 274548 Query 146239 GTACTTGGATATAGCGGCGC-AGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC-- 146295 |||||| || ||||| |||| ||| || |||||||| || ||||| || Sbjct 274549 CATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCGTAGATACCCTCAATAGAGTCCT 274607 Query 146296 GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAA 146355 |||| ||| ||| || ||||| ||| ||| ||| ||| || || || || ||| Sbjct 274608 CCTTC--ATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAA 274665 Query 146356 CAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCG---ATACGTTTCGAT 146412 | || || ||||| || || | ||| |||| |||| | || |||||||| Sbjct 274666 GAGTGTGGGAGAAGCGTGGGTGAAGAATTT---GCTCGACATCAGGTTGTAGGTTTCGAT 274722 Query 146413 AGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGG 146472 || | || |||||| || || || | ||||| ||||||| |||||| ||||| Sbjct 274723 GACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGG 274782 Query 146473 CCGCTCCGCCA-CTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATC 146531 | ||| || | |||| ||||| ||| | | || |||||| ||| ||| | | Sbjct 274783 TCTCTCGGCAATCTTG-CCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGC 274841 Query 146532 CGAAAAATTTGTA 146544 ||||| ||| ||| Sbjct 274842 CGAAATATTGGTA 274854 >seq2064 Length=287033 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||||||| || || | ||| |||||||| || |||||||| ||| | Sbjct 186246 CCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 186187 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| || ||||||||||| || || Sbjct 186186 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 186127 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | ||||||| |||||||| Sbjct 186126 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACC 186067 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | ||| | ||| || ||||| || || || |||| Sbjct 186066 TCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 186030 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || || || | ||| | || || ||||| ||||||||||| ||| | Sbjct 186474 CCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAC 186415 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 186414 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 186355 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || ||| ||||| | || | || || | || |||| Sbjct 186354 ATACCCTCCTTATCTTGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACC 186295 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || || || || ||||| |||||||| Sbjct 186294 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 186248 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | ||| |||||||| || |||||||| ||| | Sbjct 185962 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 185903 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| || ||||||||||| || || Sbjct 185902 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 185843 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | ||||||| |||||||| Sbjct 185842 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACC 185783 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||||| ||| || ||||| Sbjct 185782 TCAAGGGTAATGGTCTTGCCGGT 185760 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || | || | ||||||||||| || |||||||| || ||| Sbjct 186702 CCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 186643 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| | ||||||||| ||| | || | ||||||||| || ||||| Sbjct 186642 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGA 186583 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || || | ||||||| Sbjct 186582 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 186523 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | ||| || ||||| |||||||| Sbjct 186522 TCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 186476 >seq1255 Length=235273 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || || || | || |||||||| || |||||||| ||| Sbjct 166460 CCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 166401 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | ||||||||||| || ||| Sbjct 166400 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 166341 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 166340 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 166281 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || ||||| || || || || ||||| |||||||||| Sbjct 166280 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGA 166232 >seq1448 Length=227951 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| |||||| ||||||||||| ||| ||| Sbjct 173020 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 172961 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || || || || || ||||| ||| || ||||| | | Sbjct 172960 TCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 172901 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| || | ||||| ||| ||||| || || || || |||| Sbjct 172900 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 172841 Query 131225 AA 131226 || Sbjct 172840 AA 172839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471995713136640