Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2550 136 3e-27 seq1893 107 1e-18 seq139 96.9 2e-15 >seq2550 Length=6211 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5338 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5279 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5278 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 5244 >seq1893 Length=259282 Score = 107 bits (118), Expect = 1e-18 Identities = 200/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 ||| || ||||| |||||||| ||| | ||| | ||||| ||||||| || || || Sbjct 18023 GGATGCTTTCTATCGCTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAAGGCAA 18082 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 ||| || || ||||| | |||||| || || ||| || | |||| || || | Sbjct 18083 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGCGTTGCTCAGTCCCTCGCCCGTCCCGG 18142 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | |||| | || || ||||| | ||| || || || ||||| | | || | | Sbjct 18143 CGCCTATGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 18202 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 |||| |||| ||| | ||||| || || || | ||||||||||||||| || || Sbjct 18203 CGACGACCGCTGGATCATCAACGGCTCCCACAATGCCGCCAAGCTGCAGGACCACCTCGA 18262 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||| || |||||| || || || | | ||| | ||||| |||||||| Sbjct 18263 CGGCTTCATCAACAAGTTCGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 18316 >seq139 Length=100673 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||||||||| |||||||||| |||||| ||||||||| ||||| | ||| |||| Sbjct 61089 AAGCCCGTTCCGTTGGCTGTGGCTTCGCTGGATAGTAGAGAGGGGCAATAGGAATTTCGT 61148 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGATAT 25994 | |||| | ||||||| ||| ||||||||||| || || Sbjct 61149 TGATCCATGCATGCGCTTCATTAATTAGATGAAGAGAT 61186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334935378038576