Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 141 1e-28
>seq1484
Length=366709
Score = 141 bits (156), Expect = 1e-28
Identities = 440/678 (65%), Gaps = 16/678 (2%)
Strand=Plus/Plus
Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077
|||| ||||| || || | || ||||| | | ||| || |||| | || || | |
Sbjct 274203 CCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCT 274262
Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137
|||| ||||| || |||||||| ||||| | || || || | || | | ||||| |
Sbjct 274263 TCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCT 274322
Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197
| || ||||| ||||| | ||| | | | ||| | ||||| || || | ||
Sbjct 274323 TGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGT 274382
Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257
| ||||| | | | || || |||||||| || ||||| || | ||| | ||| ||||| |
Sbjct 274383 AGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGT 274442
Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317
| | || | | ||| || | | ||| || || ||||| || || || | ||||||
Sbjct 274443 TGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGG 274502
Query 63318 TTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375
|| ||||||| || | || |||| |||| || || || ||||| || |||||
Sbjct 274503 AGCCGGTGGCACGGATGCGATGAACGTTGA--GACCAATGCCACCGGCCATCTTGGAGAT 274560
Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435
| ||||| || | || || ||||| ||||| ||| || ||| |||||| |
Sbjct 274561 CATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGAC 274620
Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63495
|| || || |||| ||| || || || || || || | || ||||||||
Sbjct 274621 GAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGC 274680
Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTAT 63549
||| || || |||| || | || ||||| || || || ||| | |||
Sbjct 274681 GTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTC 274740
Query 63550 ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63609
| |||| || || || ||||||||||| | ||||||||| ||||| || | ||
Sbjct 274741 ACCCCA------GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAAT 274794
Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669
|||| || | || | | ||| ||| | ||||| || || || || ||||| | |||
Sbjct 274795 CTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTA 274854
Query 63670 TGAAAAGTCTCGTTCGTA 63687
||||| || || ||
Sbjct 274855 GTTGAAGTCGCGGTCATA 274872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633609062521600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |