Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1484 141 1e-28 >seq1484 Length=366709 Score = 141 bits (156), Expect = 1e-28 Identities = 440/678 (65%), Gaps = 16/678 (2%) Strand=Plus/Plus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || || | || ||||| | | ||| || |||| | || || | | Sbjct 274203 CCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCT 274262 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| ||||| || |||||||| ||||| | || || || | || | | ||||| | Sbjct 274263 TCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCT 274322 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || ||||| ||||| | ||| | | | ||| | ||||| || || | || Sbjct 274323 TGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGT 274382 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | | || || |||||||| || ||||| || | ||| | ||| ||||| | Sbjct 274383 AGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGT 274442 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | || | | ||| || | | ||| || || ||||| || || || | |||||| Sbjct 274443 TGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGG 274502 Query 63318 TTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 || ||||||| || | || |||| |||| || || || ||||| || ||||| Sbjct 274503 AGCCGGTGGCACGGATGCGATGAACGTTGA--GACCAATGCCACCGGCCATCTTGGAGAT 274560 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | ||||| || | || || ||||| ||||| ||| || ||| |||||| | Sbjct 274561 CATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGAC 274620 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63495 || || || |||| ||| || || || || || || | || |||||||| Sbjct 274621 GAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGC 274680 Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTAT 63549 ||| || || |||| || | || ||||| || || || ||| | ||| Sbjct 274681 GTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTC 274740 Query 63550 ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63609 | |||| || || || ||||||||||| | ||||||||| ||||| || | || Sbjct 274741 ACCCCA------GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAAT 274794 Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 |||| || | || | | ||| ||| | ||||| || || || || ||||| | ||| Sbjct 274795 CTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTA 274854 Query 63670 TGAAAAGTCTCGTTCGTA 63687 ||||| || || || Sbjct 274855 GTTGAAGTCGCGGTCATA 274872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633609062521600