Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2064 118 9e-22 seq1255 105 6e-18 seq1448 95.1 1e-14 >seq2064 Length=287033 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| || ||| |||| || || || || | | Sbjct 186476 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 186535 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||||||||| |||||||| Sbjct 186536 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 186595 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||||| |||||| ||||||| | || |||||| Sbjct 186596 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAAC 186655 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | || | || |||| |||||| Sbjct 186656 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGGT 186703 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || | || || || || | || ||||| || ||| | | Sbjct 186248 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 186307 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || |||||||| ||||||||||| || ||||| || Sbjct 186308 GACACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 186367 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||| | ||||| ||||||| | ||||| |||||| Sbjct 186368 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 186427 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | ||| | || | || | ||||||||| Sbjct 186428 ATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCGCCTCCGCGGAGGT 186475 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| || || || |||||||| | ||| | | || Sbjct 186044 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTGAAGTCC 186103 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| ||||| || || || | || || || || || Sbjct 186104 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGTAAG 186163 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||||| | ||||| |||||||| || || || || ||| | || Sbjct 186164 CAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 186223 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||| | || || ||| Sbjct 186224 TTGGTGCTGCGTCTCCGTGGTGGT 186247 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || | || ||||| || || || |||||||| | ||| | | || Sbjct 185760 ACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTGAAGTCC 185819 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| ||||| || || || | || || || || || Sbjct 185820 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGTAAG 185879 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||||| | ||||| |||||||| || || || || ||| | || Sbjct 185880 CAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCAC 185939 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || ||| | || | || || ||| Sbjct 185940 TTGGTTCTCCGCCTTCGTGGTGGT 185963 >seq1255 Length=235273 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| ||||| ||||| | || Sbjct 166234 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 166293 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || || || || Sbjct 166294 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 166353 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | ||||| ||||||| ||||||| |||||| Sbjct 166354 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 166413 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || || |||| | || || ||| Sbjct 166414 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCGCCTCCGTGGTGGT 166461 >seq1448 Length=227951 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || | || ||||| || || || | || || | Sbjct 172839 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 172898 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| ||||| ||||| || || || | Sbjct 172899 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTT 172958 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||||| ||| | ||||| ||||||| ||||||| |||||||| || || Sbjct 172959 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 173018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419713185700240