Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2328 131 3e-25
seq1004 113 9e-20
seq2834 109 1e-18
seq587 87.8 4e-12
>seq2328
Length=411296
Score = 131 bits (144), Expect = 3e-25
Identities = 311/465 (67%), Gaps = 10/465 (2%)
Strand=Plus/Plus
Query 251524 TTCATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCC 251582
||||| ||||| || | | || || || | ||||| || ||||| || | ||||||
Sbjct 56839 TTCATAACACC-GGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCC 56897
Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642
|||||||||| |||||| |||||||| || || | | ||||| |||| ||
Sbjct 56898 GCCCAGAGAGATGTTCTCCATAAAGTCGAACGGATTGGAAGACTTGTAGACCTTGTCATT 56957
Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702
|||||| || || |||| ||||| || || ||||| | ||||| |||||| | ||
Sbjct 56958 GCCAAGAGCAACCAAGAGACGGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGA 57017
Query 251703 GTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762
||||||||| | || | ||||| | ||||| | ||| |||| ||| | ||
Sbjct 57018 GTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGAC 57077
Query 251763 TGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818
|| || | | ||| ||| | ||||| | | | | | ||||| || | |
Sbjct 57078 AGCATCGACAATAATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGTGAG 57133
Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878
|||| ||||| | |||| | ||| |||||||| || ||| ||||| ||||||||
Sbjct 57134 AGTAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGG 57193
Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATC 251938
| | ||| |||||||| | ||||| ||| ||||||||||||| | | |||| |
Sbjct 57194 AGAAGGTCAGACCAGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCAC 57253
Query 251939 CAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCT 251983
| ||| | | ||||||||| | | ||||| |||||||
Sbjct 57254 CGCTGAAGAAGATACCCTCGACGGCGGCGAAGGCAACGAGGCGCT 57298
>seq1004
Length=106146
Score = 113 bits (124), Expect = 9e-20
Identities = 444/682 (65%), Gaps = 31/682 (5%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| ||||||||||| ||||| ||||||||||||||||| | | || ||||| || |
Sbjct 45773 GTCGGTTCTCTGTCTGGTGGATGGAAGATGAAGCTGGCTTTGGCCCGTGCCATGCTCAAG 45714
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
| ||||| ||||| ||||| || || || ||||||||| ||||| ||||| | |||
Sbjct 45713 GGCGCCGACGTCCTGCTGCTCGACGAACCTACCAACCACTTGGACGTTGCCAACATTGCC 45654
Query 279816 TGGCTAGTGTCCTACCT----AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871
||||| | | ||||||| | ||| ||| ||| || | | || || || ||
Sbjct 45653 TGGCTCGAGACCTACCTCAAGACCCACCCTG-AGA---TTACCAGTTTGATCGTTTCCCA 45598
Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931
||||||||||||||| || ||| | | |||| ||||| |||| || |||
Sbjct 45597 CGACTCTGGCTTCCTCGACAACGTCACTACCGACATCTACCACTACGAGCCCAACAAGAA 45538
Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCC 279989
||| | | | ||||||||| | || || ||| ||||| |||||
Sbjct 45537 GCTGGCGTGCTATAAGGGCAACCTGGCCAACTT--TGTCAAGCTCCGCCCCGAGGCCAAG 45480
Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049
|||||| || | || | | | | | ||||| | || |||| |||
Sbjct 45479 AGCTACTACACGCTCTCTGCTTCCCAGGTCCAATTCAAGTTCCC-GCCCCCGGGTATCTT 45421
Query 280050 GA-GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCT 280106
|| || ||| || | || || ||||| | | || ||||||||
Sbjct 45420 GACCGGTGTCAAGTCTTTGACCCGTGCCATCATCCGCATGACC--AACGTCTCCTACCAA 45363
Query 280107 TATCCCAATGGCCCCAA-CAT--CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCA 280163
|| ||||| | |||||| | | | | ||| ||||| || ||| || || || ||
Sbjct 45362 TACCCCAAGGCCCCCAAGCCTTCCCTGAGCGATGTCACCTGCCAGCTTACTCTGTCGTC- 45304
Query 280164 CGGATTGG-TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGAC 280222
| || ||| | || || ||||| ||||| || ||||||||||| ||||| |||| ||
Sbjct 45303 CAGAGTGGCCATTATCGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAAGATCCTTAC 45244
Query 280223 TGGCGAG---ACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGG 280278
||| ||| | || |||| ||| | | | |||||| |||||| |||| || |
Sbjct 45243 TGGTGAGGTCATCCCTACCAC----CGGTAAGGTAGAGAAGCACCCCAACCTGCGTATCG 45188
Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338
|||| || ||||||||| || | ||| | |||| || || || | ||| || ||||
Sbjct 45187 GTTACATCAAGCAGCACGCTCTCGAGCACGTTGAGATGCATCTCGAGAAGACGCCCAACC 45128
Query 280339 AATACATTCAGTGGCGCTATGC 280360
| ||| | |||||||| || ||
Sbjct 45127 AGTACCTCCAGTGGCGTTACGC 45106
>seq2834
Length=99110
Score = 109 bits (120), Expect = 1e-18
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || || | ||||||||| ||||| ||||| || ||||| ||||| ||||| || ||
Sbjct 74345 CTCCCGTATCGCTGTCATTGGTCCCAACGGTGCTGGCAAGTCCACCCTTATCAACGTTCT 74286
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279
||||| ||| | |||| |||| | | |||| ||||| || || ||
Sbjct 74285 CACTGGTGAGCTCGTCCCCACCCAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 74226
Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339
||| || |||||||||||| ||||||||| ||||||||||||| ||| || |
Sbjct 74225 CTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCTGA 74166
Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
||||| |||||||| | | || | ||| |||||| ||| || |||| ||
Sbjct 74165 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGACCG 74115
Score = 100 bits (110), Expect = 6e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || |||| ||||| ||||| || |||| ||||| ||||| |||
Sbjct 75160 GGTGAGGATCTTTGCAACTGCACCTTCTCTCTCGCCTACGGTGCCAAGATCCTGCTCAAC 75101
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| |||||||||| | || || ||||| ||||||||| || |
Sbjct 75100 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 75041
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| || || ||||||||||| |||| ||| | | ||| ||||| | |||
Sbjct 75040 GGCAAGTCTACCCTCATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 74982
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 74981 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 74940
Score = 89.7 bits (98), Expect = 1e-12
Identities = 122/168 (73%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | ||||| ||| ||||| | | ||||| ||||| |||||||| || || |
Sbjct 73788 CCAACTTCGGTCTTGACGCCGAGCTGGTTTCCCACTCCCGCATGCGCGGTCTGTCCGGTG 73729
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790
| ||| ||||| | || | | || ||||| ||||| | |||||| |||||||
Sbjct 73728 GTCAGCGTGTCAAGGTCGTTCTTGCTGCCTGCTCT-TGGCAGCGTCCTCACTTGATCGTC 73670
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838
|||||||||||||||||||| || ||||| || ||| || || |||
Sbjct 73669 CTCGACGAGCCTACCAACTACCTCGACCGTGACTCCCTCGGTGCCCTG 73622
>seq587
Length=327109
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 106925 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 106984
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 106985 CCCACGTCGGGCTCAAATC-CCGTC 107008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027798662115536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |