Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2328 131 3e-25 seq1004 113 9e-20 seq2834 109 1e-18 seq587 87.8 4e-12 >seq2328 Length=411296 Score = 131 bits (144), Expect = 3e-25 Identities = 311/465 (67%), Gaps = 10/465 (2%) Strand=Plus/Plus Query 251524 TTCATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCC 251582 ||||| ||||| || | | || || || | ||||| || ||||| || | |||||| Sbjct 56839 TTCATAACACC-GGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCC 56897 Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642 |||||||||| |||||| |||||||| || || | | ||||| |||| || Sbjct 56898 GCCCAGAGAGATGTTCTCCATAAAGTCGAACGGATTGGAAGACTTGTAGACCTTGTCATT 56957 Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702 |||||| || || |||| ||||| || || ||||| | ||||| |||||| | || Sbjct 56958 GCCAAGAGCAACCAAGAGACGGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGA 57017 Query 251703 GTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762 ||||||||| | || | ||||| | ||||| | ||| |||| ||| | || Sbjct 57018 GTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGAC 57077 Query 251763 TGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818 || || | | ||| ||| | ||||| | | | | | ||||| || | | Sbjct 57078 AGCATCGACAATAATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGTGAG 57133 Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878 |||| ||||| | |||| | ||| |||||||| || ||| ||||| |||||||| Sbjct 57134 AGTAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGG 57193 Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATC 251938 | | ||| |||||||| | ||||| ||| ||||||||||||| | | |||| | Sbjct 57194 AGAAGGTCAGACCAGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCAC 57253 Query 251939 CAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCT 251983 | ||| | | ||||||||| | | ||||| ||||||| Sbjct 57254 CGCTGAAGAAGATACCCTCGACGGCGGCGAAGGCAACGAGGCGCT 57298 >seq1004 Length=106146 Score = 113 bits (124), Expect = 9e-20 Identities = 444/682 (65%), Gaps = 31/682 (5%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||||||||||| ||||| ||||||||||||||||| | | || ||||| || | Sbjct 45773 GTCGGTTCTCTGTCTGGTGGATGGAAGATGAAGCTGGCTTTGGCCCGTGCCATGCTCAAG 45714 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||| ||||| ||||| || || || ||||||||| ||||| ||||| | ||| Sbjct 45713 GGCGCCGACGTCCTGCTGCTCGACGAACCTACCAACCACTTGGACGTTGCCAACATTGCC 45654 Query 279816 TGGCTAGTGTCCTACCT----AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||| | | ||||||| | ||| ||| ||| || | | || || || || Sbjct 45653 TGGCTCGAGACCTACCTCAAGACCCACCCTG-AGA---TTACCAGTTTGATCGTTTCCCA 45598 Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931 ||||||||||||||| || ||| | | |||| ||||| |||| || ||| Sbjct 45597 CGACTCTGGCTTCCTCGACAACGTCACTACCGACATCTACCACTACGAGCCCAACAAGAA 45538 Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCC 279989 ||| | | | ||||||||| | || || ||| ||||| ||||| Sbjct 45537 GCTGGCGTGCTATAAGGGCAACCTGGCCAACTT--TGTCAAGCTCCGCCCCGAGGCCAAG 45480 Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049 |||||| || | || | | | | | ||||| | || |||| ||| Sbjct 45479 AGCTACTACACGCTCTCTGCTTCCCAGGTCCAATTCAAGTTCCC-GCCCCCGGGTATCTT 45421 Query 280050 GA-GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCT 280106 || || ||| || | || || ||||| | | || |||||||| Sbjct 45420 GACCGGTGTCAAGTCTTTGACCCGTGCCATCATCCGCATGACC--AACGTCTCCTACCAA 45363 Query 280107 TATCCCAATGGCCCCAA-CAT--CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCA 280163 || ||||| | |||||| | | | | ||| ||||| || ||| || || || || Sbjct 45362 TACCCCAAGGCCCCCAAGCCTTCCCTGAGCGATGTCACCTGCCAGCTTACTCTGTCGTC- 45304 Query 280164 CGGATTGG-TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGAC 280222 | || ||| | || || ||||| ||||| || ||||||||||| ||||| |||| || Sbjct 45303 CAGAGTGGCCATTATCGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAAGATCCTTAC 45244 Query 280223 TGGCGAG---ACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGG 280278 ||| ||| | || |||| ||| | | | |||||| |||||| |||| || | Sbjct 45243 TGGTGAGGTCATCCCTACCAC----CGGTAAGGTAGAGAAGCACCCCAACCTGCGTATCG 45188 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 |||| || ||||||||| || | ||| | |||| || || || | ||| || |||| Sbjct 45187 GTTACATCAAGCAGCACGCTCTCGAGCACGTTGAGATGCATCTCGAGAAGACGCCCAACC 45128 Query 280339 AATACATTCAGTGGCGCTATGC 280360 | ||| | |||||||| || || Sbjct 45127 AGTACCTCCAGTGGCGTTACGC 45106 >seq2834 Length=99110 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | ||||||||| ||||| ||||| || ||||| ||||| ||||| || || Sbjct 74345 CTCCCGTATCGCTGTCATTGGTCCCAACGGTGCTGGCAAGTCCACCCTTATCAACGTTCT 74286 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | |||| |||| | | |||| ||||| || || || Sbjct 74285 CACTGGTGAGCTCGTCCCCACCCAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 74226 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| ||||||||| ||||||||||||| ||| || | Sbjct 74225 CTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCTGA 74166 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| || |||| || Sbjct 74165 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGACCG 74115 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| ||||| ||||| || |||| ||||| ||||| ||| Sbjct 75160 GGTGAGGATCTTTGCAACTGCACCTTCTCTCTCGCCTACGGTGCCAAGATCCTGCTCAAC 75101 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| ||||||||| || | Sbjct 75100 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 75041 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| || || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 75040 GGCAAGTCTACCCTCATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 74982 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 74981 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 74940 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| ||| ||||| | | ||||| ||||| |||||||| || || | Sbjct 73788 CCAACTTCGGTCTTGACGCCGAGCTGGTTTCCCACTCCCGCATGCGCGGTCTGTCCGGTG 73729 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | || | | || ||||| ||||| | |||||| ||||||| Sbjct 73728 GTCAGCGTGTCAAGGTCGTTCTTGCTGCCTGCTCT-TGGCAGCGTCCTCACTTGATCGTC 73670 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 |||||||||||||||||||| || ||||| || ||| || || ||| Sbjct 73669 CTCGACGAGCCTACCAACTACCTCGACCGTGACTCCCTCGGTGCCCTG 73622 >seq587 Length=327109 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 106925 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 106984 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 106985 CCCACGTCGGGCTCAAATC-CCGTC 107008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027798662115536