Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1255 176 8e-39 seq2064 152 9e-32 seq2834 149 1e-30 seq1813 107 4e-18 seq1004 107 4e-18 seq2328 91.5 3e-13 >seq1255 Length=235273 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || || ||||| || |||||||| || |||||| Sbjct 166460 CCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 166401 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || ||||| || || Sbjct 166400 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 166341 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 166340 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 166281 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||||||||| |||||||| || Sbjct 166280 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 166231 >seq2064 Length=287033 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| ||||| | || | || || || || || || || ||||| || ||||| Sbjct 186474 CCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAC 186415 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || |||||||| || Sbjct 186414 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 186355 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| | ||||||| ||||||||||||| ||||| || Sbjct 186354 ATACCCTCCTTATCTTGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACC 186295 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || ||||||||||| ||||| |||||||| Sbjct 186294 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 186248 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | ||| ||||| ||||| || |||||||| || || Sbjct 186702 CCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 186643 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || |||||||| || ||||| ||||| | || || ||||| ||| Sbjct 186642 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGA 186583 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||||||| || || ||||| | || || || Sbjct 186582 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 186523 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| || | ||||||||||| |||||||| Sbjct 186522 TCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 186476 >seq2834 Length=99110 Score = 149 bits (164), Expect = 1e-30 Identities = 666/1038 (64%), Gaps = 44/1038 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||||||| ||||||||||||| || || ||| |||||| Sbjct 74151 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 74210 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 74211 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTGGGG 74270 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || ||||| || ||||| || || | |||||| ||||| ||||| ||||| Sbjct 74271 ACGAGCTCACCAGTGAGAACGTTGATAAGGGTGGACTTGCCAGCACCGTTGGGACCAATG 74330 Query 225161 ACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGC 225218 || | || ||||| || | ||| ||| || | || ||| ||||| |||| Sbjct 74331 ACAGCGATACGGGAGCCGAGAGAGCA--CTGGAAGGAGATGTC-CTG--GATCTG-GGGC 74384 Query 225219 ---CAGTTT----GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265 | | | |||| |||| || | ||||||| |||||| | Sbjct 74385 TTACTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAG------GATGGCCTTG 74438 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325 |||||| | | |||||| ||||| |||||||||||||| ||| || | | | Sbjct 74439 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAG 74498 Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 || | || ||||||||||| || |||| ||| ||||| | ||||| Sbjct 74499 TCGCTGAGCTCGTAGTAAGACTTGGCAGCGGGGTTCTTCTTGACGAACTCCTTGAGGTTA 74558 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || ||| | ||||||||| | || |||| || || || ||| | ||| || Sbjct 74559 CCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACGTT 74614 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA 225503 ||| |||||| ||||||||||||| || ||||| || | || | | || | | || Sbjct 74615 GTCGAGGAAGGCAGAGTCGTGGGAGACGATGATAGAAGTGCAGG---GGGAGTTC-TGGA 74670 Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 ||| | |||||| ||||| | ||||||| |||||| || || ||||| |||| Sbjct 74671 GGTACTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGAA 74730 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 ||||||| || | | | || || ||| || |||| |||||||| ||||| || | Sbjct 74731 GCAGGATATCGGGAGCTTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCAC 74790 Query 225624 CGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCG 225683 | || |||| ||| | | | | | | ||| |||||| |||| ||| Sbjct 74791 CAGAGAGGGCAGAGATCTCACCCTTGATCATGCCGTCGGTGAAGCCGAACTCGTTCAGCT 74850 Query 225684 T---CTGGATAATGCGCTCGGGAGAGCTGCGAG--CGGCAACGTTGGGGTCGGACGAGAG 225738 | || || | | || ||||| || ||| | ||| | | | | | | | Sbjct 74851 TGGCCTCGACATCGGCCT-GGGAGGTCT-CGACGCCAGCATCCTGGAGCTTCTTCATGGT 74908 Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGT 225798 | ||| |||||| || | | ||| | ||||| |||||| || ||| | || || Sbjct 74909 CCACTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGACGGT 74968 Query 225799 CCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAG 225858 | || || || | |||||| ||||| | ||| | || || || || | || Sbjct 74969 CTTGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATGAG 75028 Query 225859 GGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTT 225918 |||| |||||| | |||||||||||| || ||||| | | || ||||||| Sbjct 75029 GGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGACCACGCTTGAGACG 75088 Query 225919 GAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978 |||| | || ||| || ||||||||| |||| ||||| || ||||| ||| | ||| Sbjct 75089 GAGGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCGAGAGAGAAGGTGCAGTTGCA 75148 Query 225979 CAGGTCCTCACCCTCCTC 225996 || |||||||||||||| Sbjct 75149 AAGATCCTCACCCTCCTC 75166 >seq1813 Length=570218 Score = 107 bits (118), Expect = 4e-18 Identities = 240/358 (67%), Gaps = 2/358 (1%) Strand=Plus/Plus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || ||||| || || ||| ||| ||||||||||| || ||||||| || || | Sbjct 259031 CCAGTGTGAACATCTTCGGAGAAACCAATCTCAGCCGTCCCGCCGACGTCGACGAGAGAT 259090 Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACA-CGGCGCCGCCAAAGGTGTCGCGAGA 59415 || |||||||||| |||| | || ||||| | | ||| || | | || ||| Sbjct 259091 TCGCGGCGGTAGAGTGCGTTACTTCCAACGCAAATAGACGCACCCCATCG-GTTGCGGTT 259149 Query 59416 AACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGT 59475 ||||||| | |||||| ||||| ||||| || || || | | |||||||| || Sbjct 259150 GACCTGGACAACACGGTAAAACAGCTCCTGCGTGGCACCGGCCCCCTGTTCAACCCACGT 259209 Query 59476 CTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCATG 59535 |||||| | || |||| ||||||| |||| |||| || |||| ||||| Sbjct 259210 CTGGTCATCGGTGACACGGAAGTACTGGGGACTCTGAACAAGGGCCGTCTTATCGTCACC 259269 Query 59536 GGAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGAA 59595 | | ||| | ||||||||| |||| |||||||| || || || || ||||| Sbjct 259270 CAAGTGTTCCACCATCAACTCCTTGAGGAAGTCGGGGCGCGGGCAAAAATCCGCGTCGAA 259329 Query 59596 GATGGCAAAGAAGGGGGCAGTTGTCTTGGTGAATGCGTTGCGAAGGTTGCCAGCCTTT 59653 ||||| |||||| | | ||||||| ||| | | |||||||| |||||| Sbjct 259330 AATGGCGAAGAAGTCTCCGTTGGTCTTGGCGAACGTCCATCTCAGGTTGCCCGCCTTT 259387 >seq1004 Length=106146 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 ||| |||||||||||||||||||| || || | | | | | || |||||| Sbjct 45579 GTCGAGGAAGCCAGAGTCGTGGGAAACGATCAAACTGGTAATCTCAGGGTGGGTCTTGAG 45638 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || || |||||| || | |||| ||||||| |||||| ||||||||||| || || Sbjct 45639 GTAGGTCTCGAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAG 45698 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 ||||| ||| || | |||| ||||| || | | || ||||||||| ||||| || || Sbjct 45699 CAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAAAGCCAGCTTCATCTTCCATCCACC 45758 Query 225625 GGACAGGGAGCCGA 225638 ||||| || |||| Sbjct 45759 AGACAGAGAACCGA 45772 >seq2328 Length=411296 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681 || |||||| | || ||||||||| | || |||||| ||||||||||| |||||| Sbjct 57592 CAAGTTCTCGTTGACAATGCCATCGGAAGCAGCGAAGAAGGCGAGGATGTGCGAGATGAA 57651 Query 10682 GTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGAC 10741 || |||||| ||||| | || | |||||| | ||||| | || | | Sbjct 57652 GTACTTCTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAAT 57711 Query 10742 CTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 |||||| |||||||||||| ||| | ||||||||||||||||| Sbjct 57712 CTCCTCGGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACATCTG 57756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921589037269120