Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1255 176 8e-39
seq2064 152 9e-32
seq2834 149 1e-30
seq1813 107 4e-18
seq1004 107 4e-18
seq2328 91.5 3e-13
>seq1255
Length=235273
Score = 176 bits (194), Expect = 8e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||||||| || || ||||| || |||||||| || ||||||
Sbjct 166460 CCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 166401
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || || | || ||||| || ||
Sbjct 166400 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 166341
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 166340 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 166281
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || |||||||||||||||||||| |||||||| ||
Sbjct 166280 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 166231
>seq2064
Length=287033
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| ||||| | || | || || || || || || || ||||| || |||||
Sbjct 186474 CCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAC 186415
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || | | || |||||||| ||
Sbjct 186414 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 186355
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| | ||||||| ||||||||||||| ||||| ||
Sbjct 186354 ATACCCTCCTTATCTTGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACC 186295
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| || || || || ||||||||||| ||||| ||||||||
Sbjct 186294 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 186248
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || || | || | ||| ||||| ||||| || |||||||| || ||
Sbjct 186702 CCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 186643
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || |||||||| || ||||| ||||| | || || ||||| |||
Sbjct 186642 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGA 186583
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| | ||||||| || || ||||| | || || ||
Sbjct 186582 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 186523
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || ||||| || | ||||||||||| ||||||||
Sbjct 186522 TCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 186476
>seq2834
Length=99110
Score = 149 bits (164), Expect = 1e-30
Identities = 666/1038 (64%), Gaps = 44/1038 (4%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| ||||||| ||||||||||||| || || ||| ||||||
Sbjct 74151 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 74210
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | ||| | || ||
Sbjct 74211 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTGGGG 74270
Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160
||| || ||||| || ||||| || || | |||||| ||||| ||||| |||||
Sbjct 74271 ACGAGCTCACCAGTGAGAACGTTGATAAGGGTGGACTTGCCAGCACCGTTGGGACCAATG 74330
Query 225161 ACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGC 225218
|| | || ||||| || | ||| ||| || | || ||| ||||| ||||
Sbjct 74331 ACAGCGATACGGGAGCCGAGAGAGCA--CTGGAAGGAGATGTC-CTG--GATCTG-GGGC 74384
Query 225219 ---CAGTTT----GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265
| | | |||| |||| || | ||||||| |||||| |
Sbjct 74385 TTACTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAG------GATGGCCTTG 74438
Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325
|||||| | | |||||| ||||| |||||||||||||| ||| || | | |
Sbjct 74439 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAG 74498
Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385
|| | || ||||||||||| || |||| ||| ||||| | |||||
Sbjct 74499 TCGCTGAGCTCGTAGTAAGACTTGGCAGCGGGGTTCTTCTTGACGAACTCCTTGAGGTTA 74558
Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444
|| ||| | ||||||||| | || |||| || || || ||| | ||| ||
Sbjct 74559 CCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACGTT 74614
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA 225503
||| |||||| ||||||||||||| || ||||| || | || | | || | | ||
Sbjct 74615 GTCGAGGAAGGCAGAGTCGTGGGAGACGATGATAGAAGTGCAGG---GGGAGTTC-TGGA 74670
Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563
||| | |||||| ||||| | ||||||| |||||| || || ||||| ||||
Sbjct 74671 GGTACTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGAA 74730
Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623
||||||| || | | | || || ||| || |||| |||||||| ||||| || |
Sbjct 74731 GCAGGATATCGGGAGCTTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCAC 74790
Query 225624 CGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCG 225683
| || |||| ||| | | | | | | ||| |||||| |||| |||
Sbjct 74791 CAGAGAGGGCAGAGATCTCACCCTTGATCATGCCGTCGGTGAAGCCGAACTCGTTCAGCT 74850
Query 225684 T---CTGGATAATGCGCTCGGGAGAGCTGCGAG--CGGCAACGTTGGGGTCGGACGAGAG 225738
| || || | | || ||||| || ||| | ||| | | | | | | |
Sbjct 74851 TGGCCTCGACATCGGCCT-GGGAGGTCT-CGACGCCAGCATCCTGGAGCTTCTTCATGGT 74908
Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGT 225798
| ||| |||||| || | | ||| | ||||| |||||| || ||| | || ||
Sbjct 74909 CCACTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGACGGT 74968
Query 225799 CCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAG 225858
| || || || | |||||| ||||| | ||| | || || || || | ||
Sbjct 74969 CTTGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATGAG 75028
Query 225859 GGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTT 225918
|||| |||||| | |||||||||||| || ||||| | | || |||||||
Sbjct 75029 GGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGACCACGCTTGAGACG 75088
Query 225919 GAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978
|||| | || ||| || ||||||||| |||| ||||| || ||||| ||| | |||
Sbjct 75089 GAGGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCGAGAGAGAAGGTGCAGTTGCA 75148
Query 225979 CAGGTCCTCACCCTCCTC 225996
|| ||||||||||||||
Sbjct 75149 AAGATCCTCACCCTCCTC 75166
>seq1813
Length=570218
Score = 107 bits (118), Expect = 4e-18
Identities = 240/358 (67%), Gaps = 2/358 (1%)
Strand=Plus/Plus
Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356
|| ||||| || || ||| ||| ||||||||||| || ||||||| || || |
Sbjct 259031 CCAGTGTGAACATCTTCGGAGAAACCAATCTCAGCCGTCCCGCCGACGTCGACGAGAGAT 259090
Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACA-CGGCGCCGCCAAAGGTGTCGCGAGA 59415
|| |||||||||| |||| | || ||||| | | ||| || | | || |||
Sbjct 259091 TCGCGGCGGTAGAGTGCGTTACTTCCAACGCAAATAGACGCACCCCATCG-GTTGCGGTT 259149
Query 59416 AACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGT 59475
||||||| | |||||| ||||| ||||| || || || | | |||||||| ||
Sbjct 259150 GACCTGGACAACACGGTAAAACAGCTCCTGCGTGGCACCGGCCCCCTGTTCAACCCACGT 259209
Query 59476 CTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCATG 59535
|||||| | || |||| ||||||| |||| |||| || |||| |||||
Sbjct 259210 CTGGTCATCGGTGACACGGAAGTACTGGGGACTCTGAACAAGGGCCGTCTTATCGTCACC 259269
Query 59536 GGAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGAA 59595
| | ||| | ||||||||| |||| |||||||| || || || || |||||
Sbjct 259270 CAAGTGTTCCACCATCAACTCCTTGAGGAAGTCGGGGCGCGGGCAAAAATCCGCGTCGAA 259329
Query 59596 GATGGCAAAGAAGGGGGCAGTTGTCTTGGTGAATGCGTTGCGAAGGTTGCCAGCCTTT 59653
||||| |||||| | | ||||||| ||| | | |||||||| ||||||
Sbjct 259330 AATGGCGAAGAAGTCTCCGTTGGTCTTGGCGAACGTCCATCTCAGGTTGCCCGCCTTT 259387
>seq1004
Length=106146
Score = 107 bits (118), Expect = 4e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504
||| |||||||||||||||||||| || || | | | | | || ||||||
Sbjct 45579 GTCGAGGAAGCCAGAGTCGTGGGAAACGATCAAACTGGTAATCTCAGGGTGGGTCTTGAG 45638
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| || |||||| || | |||| ||||||| |||||| ||||||||||| || ||
Sbjct 45639 GTAGGTCTCGAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAG 45698
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
||||| ||| || | |||| ||||| || | | || ||||||||| ||||| || ||
Sbjct 45699 CAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAAAGCCAGCTTCATCTTCCATCCACC 45758
Query 225625 GGACAGGGAGCCGA 225638
||||| || ||||
Sbjct 45759 AGACAGAGAACCGA 45772
>seq2328
Length=411296
Score = 91.5 bits (100), Expect = 3e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681
|| |||||| | || ||||||||| | || |||||| ||||||||||| ||||||
Sbjct 57592 CAAGTTCTCGTTGACAATGCCATCGGAAGCAGCGAAGAAGGCGAGGATGTGCGAGATGAA 57651
Query 10682 GTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGAC 10741
|| |||||| ||||| | || | |||||| | ||||| | || | |
Sbjct 57652 GTACTTCTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAAT 57711
Query 10742 CTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786
|||||| |||||||||||| ||| | |||||||||||||||||
Sbjct 57712 CTCCTCGGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACATCTG 57756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921589037269120
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