Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 495 7e-135
seq2328 260 3e-64
>seq1484
Length=366709
Score = 495 bits (548), Expect = 7e-135
Identities = 942/1374 (69%), Gaps = 51/1374 (4%)
Strand=Plus/Plus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || ||||| ||||| || | || || || |||||||||| |||| | || ||
Sbjct 273364 GTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 273423
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
||| | || ||| ||||||||| ||||||| ||||| |||||||||||||||| ||
Sbjct 273424 CTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGAC 273483
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCA---GTC 244266
|| ||| ||| | || |||||| || ||| ||| ||| ||| | |||
Sbjct 273484 GAGAAGAGAGTTGCGGACACCGTGCTGCTTGAT-------CTG--CTCCTTCAAAGCGTC 273534
Query 244267 CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326
||| | || |||| ||| | | |||| ||||||||| |||| || | ||||
Sbjct 273535 CCA---GTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTG 273591
Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGC 244385
||||||| |||||||| ||| ||||||| || || || |||||||| || |
Sbjct 273592 AGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGA 273651
Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445
| || |||||| |||| |||||||||||| |||||| ||||||| | |||||| ||||
Sbjct 273652 CATGGT-GAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCT 273710
Query 244446 TGCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503
| | || |||||| |||| || || |||| | || || || ||||| || ||
Sbjct 273711 --CAGGAGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACC 273768
Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563
|| || ||||| | ||| ||| ||||| | || || | || ||||| |||
Sbjct 273769 GAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTT 273828
Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623
| ||||||| | |||| ||||||||| | | || ||| ||| ||| |||
Sbjct 273829 GACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTG 273888
Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683
|||||||| || ||||| | | || | ||||| | | |||||
Sbjct 273889 GAAGTCGTAGACGC------CCTCGTTG-TAGTCA-----ACAAAGGTGGGCAAGGCGAG 273936
Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743
||||||||||||||| || ||||| || | | ||||| || ||||| |||||
Sbjct 273937 CGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCA 273996
Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803
|||||| || ||||||||| |||| || || ||| |||| |||| ||| ||
Sbjct 273997 GAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 274056
Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863
||||||||||||||| || || |||||| |||||| |||||| | | ||||||
Sbjct 274057 CTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAG 274116
Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGGG 244922
| | ||||| | ||| ||||| |||||||| |||| |||||| ||||| ||
Sbjct 274117 CTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCATCTG-CTCGTACTTCTCGTACAAGG 274175
Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982
|||||||||| ||| || ||| | ||||| |||||| ||||||||||||
Sbjct 274176 CCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAG 274235
Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042
|||| || ||| | || ||||||| ||||||||||||||| |||||||| || |||
Sbjct 274236 TCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGA 274295
Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102
| ||||| | || | ||| ||| ||| |||||| | ||| ||||| ||||| |
Sbjct 274296 AAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGA 274355
Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162
|||| ||| ||||||| ||||| | ||||| |||| || || || || |||||||| |
Sbjct 274356 AGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCAC 274415
Query 245163 CCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCG 245218
||||||| | | | ||||| |||||||| || || | || || | |||
Sbjct 274416 CCTGGTCGA----CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCG 274471
Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC 245278
|| ||| ||||| ||||| || |||| ||| || | | || ||| |||| ||
Sbjct 274472 TTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCAC---GGATGC-GATGAAC 274527
Query 245279 ----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334
| || | || ||||| ||||||||| | |||||| |||||| ||||||
Sbjct 274528 GTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTA 274587
Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394
|| ||||| || |||| |||||||| || || ||||| ||||||||||||| ||
Sbjct 274588 GATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTG 274647
Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448
||| | | | |||||| || ||||| |||||||| ||| | ||||||
Sbjct 274648 AGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGA 274701
>seq2328
Length=411296
Score = 260 bits (288), Expect = 3e-64
Identities = 376/519 (72%), Gaps = 15/519 (3%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691
||||||||| |||||||| |||||||| || || |||||| || | | || | | |
Sbjct 57365 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATC-AGCGACGAGAAGTCCTC 57307
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|||| | || | || || ||||| ||||||||||||| ||||||||| || |||||
Sbjct 57306 CTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTT 57247
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACG 42810
|||||||||||||||||||||| || | ||| ||||| || || |||||||| ||||
Sbjct 57246 CGCCTCCATCTTCTGGCTCAAGAAGCGTG-GTCTTATGCCTGGTCTGACCTTCTCCAACG 57188
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
| |||||| | || ||||| || || | ||||||||||||||||| | ||| |
Sbjct 57187 AGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTC---TC 57131
Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC---CGGGCCATCATCACGGAGGCCGTGG 42927
|||||| | || |||| | | ||| |||| || ||| || || || ||
Sbjct 57130 ACCTCAAGAAC-CGCCCCAGCA--AGCAGGTCATTGAGGACATTATTGTCGATGCTGTCA 57074
Query 42928 AGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACG 42987
|||||||| |||||||||| || || | ||||| | ||| ||||||||||| |
Sbjct 57073 AGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCA 57014
Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC 43046
|||| ||| ||||||| ||| |||||| |||| |||| | || | ||| |
Sbjct 57013 ACCTGATGAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAATG 56954
Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106
| | ||||||| | | || ||||||||||||||||||||||| ||| |||
Sbjct 56953 A-CAAGGTCTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCGGC 56895
Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
||||||||||| || |||||||| || ||||||||||||
Sbjct 56894 AAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCAG 56856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944305014920960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |