Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1484 495 7e-135 seq2328 260 3e-64 >seq1484 Length=366709 Score = 495 bits (548), Expect = 7e-135 Identities = 942/1374 (69%), Gaps = 51/1374 (4%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || |||||||||| |||| | || || Sbjct 273364 GTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 273423 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || ||| ||||||||| ||||||| ||||| |||||||||||||||| || Sbjct 273424 CTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGAC 273483 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCA---GTC 244266 || ||| ||| | || |||||| || ||| ||| ||| ||| | ||| Sbjct 273484 GAGAAGAGAGTTGCGGACACCGTGCTGCTTGAT-------CTG--CTCCTTCAAAGCGTC 273534 Query 244267 CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326 ||| | || |||| ||| | | |||| ||||||||| |||| || | |||| Sbjct 273535 CCA---GTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTG 273591 Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGC 244385 ||||||| |||||||| ||| ||||||| || || || |||||||| || | Sbjct 273592 AGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGA 273651 Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445 | || |||||| |||| |||||||||||| |||||| ||||||| | |||||| |||| Sbjct 273652 CATGGT-GAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCT 273710 Query 244446 TGCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 | | || |||||| |||| || || |||| | || || || ||||| || || Sbjct 273711 --CAGGAGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACC 273768 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563 || || ||||| | ||| ||| ||||| | || || | || ||||| ||| Sbjct 273769 GAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTT 273828 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623 | ||||||| | |||| ||||||||| | | || ||| ||| ||| ||| Sbjct 273829 GACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTG 273888 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 |||||||| || ||||| | | || | ||||| | | ||||| Sbjct 273889 GAAGTCGTAGACGC------CCTCGTTG-TAGTCA-----ACAAAGGTGGGCAAGGCGAG 273936 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 ||||||||||||||| || ||||| || | | ||||| || ||||| ||||| Sbjct 273937 CGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCA 273996 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 |||||| || ||||||||| |||| || || ||| |||| |||| ||| || Sbjct 273997 GAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 274056 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||||||||| || || |||||| |||||| |||||| | | |||||| Sbjct 274057 CTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAG 274116 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGGG 244922 | | ||||| | ||| ||||| |||||||| |||| |||||| ||||| || Sbjct 274117 CTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCATCTG-CTCGTACTTCTCGTACAAGG 274175 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982 |||||||||| ||| || ||| | ||||| |||||| |||||||||||| Sbjct 274176 CCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAG 274235 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 |||| || ||| | || ||||||| ||||||||||||||| |||||||| || ||| Sbjct 274236 TCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGA 274295 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 | ||||| | || | ||| ||| ||| |||||| | ||| ||||| ||||| | Sbjct 274296 AAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGA 274355 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 |||| ||| ||||||| ||||| | ||||| |||| || || || || |||||||| | Sbjct 274356 AGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCAC 274415 Query 245163 CCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCG 245218 ||||||| | | | ||||| |||||||| || || | || || | ||| Sbjct 274416 CCTGGTCGA----CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCG 274471 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC 245278 || ||| ||||| ||||| || |||| ||| || | | || ||| |||| || Sbjct 274472 TTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCAC---GGATGC-GATGAAC 274527 Query 245279 ----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 | || | || ||||| ||||||||| | |||||| |||||| |||||| Sbjct 274528 GTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTA 274587 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394 || ||||| || |||| |||||||| || || ||||| ||||||||||||| || Sbjct 274588 GATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTG 274647 Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 ||| | | | |||||| || ||||| |||||||| ||| | |||||| Sbjct 274648 AGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGA 274701 >seq2328 Length=411296 Score = 260 bits (288), Expect = 3e-64 Identities = 376/519 (72%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 ||||||||| |||||||| |||||||| || || |||||| || | | || | | | Sbjct 57365 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATC-AGCGACGAGAAGTCCTC 57307 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| | || | || || ||||| ||||||||||||| ||||||||| || ||||| Sbjct 57306 CTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTT 57247 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACG 42810 |||||||||||||||||||||| || | ||| ||||| || || |||||||| |||| Sbjct 57246 CGCCTCCATCTTCTGGCTCAAGAAGCGTG-GTCTTATGCCTGGTCTGACCTTCTCCAACG 57188 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | |||||| | || ||||| || || | ||||||||||||||||| | ||| | Sbjct 57187 AGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTC---TC 57131 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC---CGGGCCATCATCACGGAGGCCGTGG 42927 |||||| | || |||| | | ||| |||| || ||| || || || || Sbjct 57130 ACCTCAAGAAC-CGCCCCAGCA--AGCAGGTCATTGAGGACATTATTGTCGATGCTGTCA 57074 Query 42928 AGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACG 42987 |||||||| |||||||||| || || | ||||| | ||| ||||||||||| | Sbjct 57073 AGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCA 57014 Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC 43046 |||| ||| ||||||| ||| |||||| |||| |||| | || | ||| | Sbjct 57013 ACCTGATGAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAATG 56954 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | | ||||||| | | || ||||||||||||||||||||||| ||| ||| Sbjct 56953 A-CAAGGTCTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCGGC 56895 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||| || |||||||| || |||||||||||| Sbjct 56894 AAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCAG 56856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944305014920960