Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2328 84.2 5e-11 >seq2328 Length=411296 Score = 84.2 bits (92), Expect = 5e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||| | ||| ||| | || ||| || | ||||||||||| | || ||| Sbjct 57064 AGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGA 57005 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 |||||||| || ||||| || ||||| | || | || ||||| |||| || || | Sbjct 57004 AGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAATGACAAGGTCT 56945 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 |||| || || || || | |||||||||| ||| || || || || || |||| Sbjct 56944 ACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCGGCAAGACCAACT 56885 Query 243710 TCTTCGAAAAGCGTGT 243725 |||| || |||||||| Sbjct 56884 TCTTTGAGAAGCGTGT 56869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102839077637600