Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1484 250 3e-61 seq2328 122 1e-22 >seq1484 Length=366709 Score = 250 bits (276), Expect = 3e-61 Identities = 1056/1648 (64%), Gaps = 41/1648 (2%) Strand=Plus/Plus Query 113758 GATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTG 113817 ||||||||| ||||| |||| ||| ||| | ||| ||||| | ||| || || Sbjct 273220 GATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTG 273279 Query 113818 GATGGAGCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAAT 113874 ||| || ||| || | | |||| | | |||||| | | ||||| | ||| || Sbjct 273280 GATCGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCAT 273336 Query 113875 CTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 113934 | || |||| || ||| ||||| || |||||||| || || || Sbjct 273337 GTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACG 273396 Query 113935 TCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 113994 || | | ||||| |||| ||||| |||||||||||||| ||||| |||||||| || | Sbjct 273397 TCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGA 273456 Query 113995 GGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAAT 114054 |||| || || |||||||| || | |||||| ||| |||| ||| | | | | || Sbjct 273457 GGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGAT 273516 Query 114055 GCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAA 114114 | ||||| | ||||||||||| || | | || | | |||||| || | Sbjct 273517 CTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCGTA 273576 Query 114115 CTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTC 114174 ||||||||| || || ||| | || || ||||| | |||| ||| |||||||| ||| Sbjct 273577 CTGGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTT 273636 Query 114175 CGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGC 114231 |||| | | || | | |||||| ||||| || || |||||||| || Sbjct 273637 GGCCAGCTGCACCGACATGG---TGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTT 273693 Query 114232 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATAAATACATCCG 114290 || | | ||||| || || || | | | ||| | | || |||| | Sbjct 273694 GTTTAGGTCGCGAGCCTCAGGAGACTCGAA-GGGCATGCGCAGAGCCAGGAAGGCATCAG 273752 Query 114291 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT 114350 | ||||| ||||||||||| ||||| ||||| || | ||| || || ||||| || Sbjct 273753 CAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCT 273812 Query 114351 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 114410 || || || || ||||| | || || || || | ||||||| |||| Sbjct 273813 GAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGA 273872 Query 114411 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG---ACATACTTAGGAA 114467 || || ||||| | | | || | || ||| | | | ||| | | || | Sbjct 273873 CCTCGTGGAGCTTCTGGAAGTCGTAGACGC---CCTCGTTGTAGTCAACAAAGGTGGGCA 273929 Query 114468 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 114527 ||||| || ||||| || || || | | |||||| | |||||| || || | Sbjct 273930 AGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCT 273989 Query 114528 CCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 114587 |||| || | || || || |||||||| | |||||| || || ||| ||| Sbjct 273990 CCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGG 274049 Query 114588 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 114647 ||||||||||| |||||| | || | || ||||| || |||| || ||| || || | Sbjct 274050 CGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCAT 274109 Query 114648 TCCAGA-CATCGGCGGCTGGCACAGTGGCGTTG----GCTCGCCCCTCCTCCTCGTACTT 114702 ||||| | || | ||| || ||| ||| || |||| | || ||||||||| Sbjct 274110 ACCAGAGCTTCTG-GGCCTTCA---TGGTCTTGCGACCCTTGCCCAT-CTGCTCGTACTT 274164 Query 114703 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 114762 ||| | ||| || ||||| || || | || | || || || || | || Sbjct 274165 CTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGG 274224 Query 114763 GCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCA 114822 ||| | ||||| ||| | || || ||| || | ||||||||||||||| || ||||| Sbjct 274225 GCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCA 274284 Query 114823 GAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 114882 |||||| ||| || || || ||| | || || | || || || |||| || Sbjct 274285 GAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATC 274344 Query 114883 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC---CT 114938 ||| ||||| | || ||| |||||||| || || ||||| | |||| | |||| | Sbjct 274345 CAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCG 274404 Query 114939 TACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998 | | | ||| |||||| || || | || ||| || || || || ||||| || | Sbjct 274405 TTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGA 274463 Query 114999 TGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCAT 115058 || ||| | || || || || || |||| || |||| | || || Sbjct 274464 CGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGAT 274523 Query 115059 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 115118 | | || | |||||| || || ||| ||| ||||| ||||| | |||| || Sbjct 274524 GAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGT 274583 Query 115119 CGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTG 115178 ||||||| || || || ||||| |||| | ||| |||||||| |||| || | Sbjct 274584 CGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG-G 274642 Query 115179 GCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA--TACCTTGGG 115235 |||| || ||||||||||||||||| || || | |||||| |||| | | || | Sbjct 274643 GCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCT--CG 274700 Query 115236 ACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 115295 ||||| | |||||| || | |||| || ||| || || ||||| | | || Sbjct 274701 ACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGA 274760 Query 115296 CCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAAC 115355 | ||||| | ||||| |||||| | || | | || || ||| | ||||||| Sbjct 274761 CACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATG 274820 Query 115356 TCTTCTCCAAGGTCTTGAGACCAAAATA 115383 ||||||||||||||| || ||||| Sbjct 274821 ATCTCTCCAAGGTCTTGAAGCCGAAATA 274848 >seq2328 Length=411296 Score = 122 bits (134), Expect = 1e-22 Identities = 343/520 (66%), Gaps = 14/520 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| |||||||| |||||||| ||||| ||| ||| ||| |||||||| Sbjct 56859 GTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCAT 56918 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 125876 ||| || || || || || || | | ||| || |||| | ||||| Sbjct 56919 AAAGTCGAACGGATTGGAAGACTTGTAGACC-TTGTCATTGCCAAGAGCAACCAAGAGAC 56977 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 | || | |||| |||||||||||| |||| | |||||||| |||| || | Sbjct 56978 GGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAGCGC 57037 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | || || || || | |||| ||| ||| || | || || || | ||| | | Sbjct 57038 AAGGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGACAATAATGTCCT 57097 Query 125997 GAATGGTGTCCACCCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053 |||| | | | || | | ||| | || | || ||| || |||||| | Sbjct 57098 CAATGACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTAGAGGAGG--CA-GGCAAAGT 57154 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | |||||||||||| ||||| |||||||| || || |||||| ||| || ||||| | Sbjct 57155 CGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAA 57214 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 |||| |||||||| | |||||| || | || | ||| ||||||||| ||||| | Sbjct 57215 GACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGA 57274 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAACCACT 126230 | ||||| |||| ||| |||| || |||||| ||||| ||| | ||||| Sbjct 57275 CGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAG---GACTTCTCGTCGCTGATCCACT 57331 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 126270 ||| ||||| | ||||| || ||| || || || || Sbjct 57332 TCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGAACTGT 57371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597331975799680