Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 250 3e-61
seq2328 122 1e-22
>seq1484
Length=366709
Score = 250 bits (276), Expect = 3e-61
Identities = 1056/1648 (64%), Gaps = 41/1648 (2%)
Strand=Plus/Plus
Query 113758 GATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTG 113817
||||||||| ||||| |||| ||| ||| | ||| ||||| | ||| || ||
Sbjct 273220 GATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTG 273279
Query 113818 GATGGAGCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAAT 113874
||| || ||| || | | |||| | | |||||| | | ||||| | ||| ||
Sbjct 273280 GATCGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCAT 273336
Query 113875 CTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 113934
| || |||| || ||| ||||| || |||||||| || || ||
Sbjct 273337 GTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACG 273396
Query 113935 TCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 113994
|| | | ||||| |||| ||||| |||||||||||||| ||||| |||||||| || |
Sbjct 273397 TCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGA 273456
Query 113995 GGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAAT 114054
|||| || || |||||||| || | |||||| ||| |||| ||| | | | | ||
Sbjct 273457 GGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGAT 273516
Query 114055 GCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAA 114114
| ||||| | ||||||||||| || | | || | | |||||| || |
Sbjct 273517 CTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCGTA 273576
Query 114115 CTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTC 114174
||||||||| || || ||| | || || ||||| | |||| ||| |||||||| |||
Sbjct 273577 CTGGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTT 273636
Query 114175 CGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGC 114231
|||| | | || | | |||||| ||||| || || |||||||| ||
Sbjct 273637 GGCCAGCTGCACCGACATGG---TGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTT 273693
Query 114232 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATAAATACATCCG 114290
|| | | ||||| || || || | | | ||| | | || |||| |
Sbjct 273694 GTTTAGGTCGCGAGCCTCAGGAGACTCGAA-GGGCATGCGCAGAGCCAGGAAGGCATCAG 273752
Query 114291 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT 114350
| ||||| ||||||||||| ||||| ||||| || | ||| || || ||||| ||
Sbjct 273753 CAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCT 273812
Query 114351 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 114410
|| || || || ||||| | || || || || | ||||||| ||||
Sbjct 273813 GAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGA 273872
Query 114411 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG---ACATACTTAGGAA 114467
|| || ||||| | | | || | || ||| | | | ||| | | || |
Sbjct 273873 CCTCGTGGAGCTTCTGGAAGTCGTAGACGC---CCTCGTTGTAGTCAACAAAGGTGGGCA 273929
Query 114468 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 114527
||||| || ||||| || || || | | |||||| | |||||| || || |
Sbjct 273930 AGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCT 273989
Query 114528 CCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 114587
|||| || | || || || |||||||| | |||||| || || ||| |||
Sbjct 273990 CCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGG 274049
Query 114588 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 114647
||||||||||| |||||| | || | || ||||| || |||| || ||| || || |
Sbjct 274050 CGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCAT 274109
Query 114648 TCCAGA-CATCGGCGGCTGGCACAGTGGCGTTG----GCTCGCCCCTCCTCCTCGTACTT 114702
||||| | || | ||| || ||| ||| || |||| | || |||||||||
Sbjct 274110 ACCAGAGCTTCTG-GGCCTTCA---TGGTCTTGCGACCCTTGCCCAT-CTGCTCGTACTT 274164
Query 114703 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 114762
||| | ||| || ||||| || || | || | || || || || | ||
Sbjct 274165 CTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGG 274224
Query 114763 GCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCA 114822
||| | ||||| ||| | || || ||| || | ||||||||||||||| || |||||
Sbjct 274225 GCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCA 274284
Query 114823 GAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 114882
|||||| ||| || || || ||| | || || | || || || |||| ||
Sbjct 274285 GAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATC 274344
Query 114883 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC---CT 114938
||| ||||| | || ||| |||||||| || || ||||| | |||| | |||| |
Sbjct 274345 CAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCG 274404
Query 114939 TACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998
| | | ||| |||||| || || | || ||| || || || || ||||| || |
Sbjct 274405 TTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGA 274463
Query 114999 TGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCAT 115058
|| ||| | || || || || || |||| || |||| | || ||
Sbjct 274464 CGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGAT 274523
Query 115059 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 115118
| | || | |||||| || || ||| ||| ||||| ||||| | |||| ||
Sbjct 274524 GAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGT 274583
Query 115119 CGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTG 115178
||||||| || || || ||||| |||| | ||| |||||||| |||| || |
Sbjct 274584 CGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG-G 274642
Query 115179 GCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA--TACCTTGGG 115235
|||| || ||||||||||||||||| || || | |||||| |||| | | || |
Sbjct 274643 GCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCT--CG 274700
Query 115236 ACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 115295
||||| | |||||| || | |||| || ||| || || ||||| | | ||
Sbjct 274701 ACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGA 274760
Query 115296 CCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAAC 115355
| ||||| | ||||| |||||| | || | | || || ||| | |||||||
Sbjct 274761 CACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATG 274820
Query 115356 TCTTCTCCAAGGTCTTGAGACCAAAATA 115383
||||||||||||||| || |||||
Sbjct 274821 ATCTCTCCAAGGTCTTGAAGCCGAAATA 274848
>seq2328
Length=411296
Score = 122 bits (134), Expect = 1e-22
Identities = 343/520 (66%), Gaps = 14/520 (3%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
|||||| |||| |||||||| |||||||| ||||| ||| ||| ||| ||||||||
Sbjct 56859 GTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCAT 56918
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 125876
||| || || || || || || | | ||| || |||| | |||||
Sbjct 56919 AAAGTCGAACGGATTGGAAGACTTGTAGACC-TTGTCATTGCCAAGAGCAACCAAGAGAC 56977
Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936
| || | |||| |||||||||||| |||| | |||||||| |||| || |
Sbjct 56978 GGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAGCGC 57037
Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996
| || || || || | |||| ||| ||| || | || || || | ||| | |
Sbjct 57038 AAGGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGACAATAATGTCCT 57097
Query 125997 GAATGGTGTCCACCCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053
|||| | | | || | | ||| | || | || ||| || |||||| |
Sbjct 57098 CAATGACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTAGAGGAGG--CA-GGCAAAGT 57154
Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113
| |||||||||||| ||||| |||||||| || || |||||| ||| || ||||| |
Sbjct 57155 CGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAA 57214
Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173
|||| |||||||| | |||||| || | || | ||| ||||||||| ||||| |
Sbjct 57215 GACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGA 57274
Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAACCACT 126230
| ||||| |||| ||| |||| || |||||| ||||| ||| | |||||
Sbjct 57275 CGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAG---GACTTCTCGTCGCTGATCCACT 57331
Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 126270
||| ||||| | ||||| || ||| || || || ||
Sbjct 57332 TCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGAACTGT 57371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597331975799680
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