Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq2064 105 7e-18
seq1255 104 3e-17
>seq2064
Length=287033
Score = 105 bits (116), Expect = 7e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| |||||| || | || |||||| || || ||||| || | ||| || || |
Sbjct 186235 ACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 186176
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || ||||||||||||||||| || | ||||||||||||| || | || ||||||
Sbjct 186175 GTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTT 186116
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
|||| ||| | || | | ||| | | | || ||| || || || || | ||||
Sbjct 186115 GTCC-TGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGA 186057
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTAC 42196
|||| ||||| || |||||||| ||
Sbjct 186056 TGGTCTTGCCGGTAAGCGTCTTGAC 186032
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| ||||| ||||| || | ||| || || |||| || |||||||| ||||||||
Sbjct 186438 TCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 186379
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| | ||||||||||||| || | | |||||| | | ||| | || | |||| |||
Sbjct 186378 ATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTAT-CTTGAATCTTCGACTTGA-CGT 186321
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||||| |||||| || || | || || || ||||| || || ||||| |
Sbjct 186320 TGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAA 186261
Query 42196 CAAAGATTTGCAT 42208
| ||||| |||||
Sbjct 186260 CGAAGATCTGCAT 186248
Score = 86.0 bits (94), Expect = 7e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | ||| || || |||| || |||||||||||||||||
Sbjct 185927 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAA 185868
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116
|| | ||||||||||||| || | || ||||||||||
Sbjct 185867 GATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 185828
>seq1255
Length=235273
Score = 104 bits (114), Expect = 3e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||||| || | || |||||| || || ||||| || | || || || ||
Sbjct 166448 CGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 166389
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| |||||||| || || ||||||||||| | || | || |||||||
Sbjct 166388 TCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 166329
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || |||| | | | |||||| || ||||| || | |||||
Sbjct 166328 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 166269
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || ||||| || ||||| || ||||| |||||
Sbjct 166268 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 166234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543193135696640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |