Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1484 336 2e-87 >seq1484 Length=366709 Score = 336 bits (372), Expect = 2e-87 Identities = 1085/1668 (65%), Gaps = 32/1668 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | || || | |||||| || |||||| || |||||||||||| | || ||| Sbjct 274857 AACTACCAATATTTCGGCTTCAAGACCTTGGAGAGATCATACCTCCTCAAGCTTGACGGC 274798 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| |||| || || || | ||||| |||||| | || || || || Sbjct 274797 AAGATTGCCGAGAGACCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGAC 274738 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||| | | || | | | || ||| | ||| | ||| || Sbjct 274737 GACGTTGAGCGCGTCATCGAAACCTACAACCTGATGTCGAGCAAATTCTTCACCCACGCT 274678 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || || || |||||||| || ||||| | | ||| |||| || || ||||| | Sbjct 274677 TCTCCCACACTCTTCAACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTC 274618 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||||| || || || | ||||| ||||||| || || | || Sbjct 274617 GAC-ATGAAGGAGGACTCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGAT 274559 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || ||| || || | | ||||||| || ||||| Sbjct 274558 CTCCAAGATGGCCGGTGGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCTA 274499 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 || ||| || || || ||||| ||||| ||||||| |||||||| ||||||||||| Sbjct 274498 TATTGCCGGCACTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAA 274439 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || |||||||| ||||||||||| | | |||| ||||||| |||| || Sbjct 274438 CACTGCTCGCTACGTCGACCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCT 274379 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||| |||||||| || || | ||| | || ||||| |||||||||||||| || Sbjct 274378 TGAGCCTTGGCACGCCGATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGA 274319 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | ||| | ||||| ||| |||||||||| | || ||||| || ||||| | Sbjct 274318 GGAGGTTCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAG 274259 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || ||||| ||| | ||||| ||| | || ||||| || || || || ||| |||| Sbjct 274258 GGTAGAGAAGAACGGGGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGA 274199 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 | | || | || || | |||||| | ||||| | |||||||| | Sbjct 274198 CTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCG 274139 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 ||| ||| | || |||||| ||| || ||| | || | ||| ||||| || Sbjct 274138 CAAGACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGG 274079 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 | || | ||| | | |||||| | | |||| |||| ||||||| || |||| || Sbjct 274078 CAACCCTTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGG 274019 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||| ||||| || || ||||| ||||| ||||||| | || || ||| | Sbjct 274018 CACCATCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGT 273959 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTC 94673 || || || ||||||| ||| || | || |||| || || || ||||| | Sbjct 273958 CGCGGTCTGCAACCTGGCCTCGCTCGCCTTGCCCACCTTTGT------TGACTACA--AC 273907 Query 94674 TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG--GTCTTGAAC 94731 | || || | ||| | || |||| | || | ||| || ||| ||| Sbjct 273906 GAGGGCGTC-TACGACTTCCAGAAGCTCCACGAGGTCAC--CCAGGTTGTTGTCCGCAAC 273850 Query 94732 CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTG 94791 |||||||| | |||||| ||| |||||| || | |||||| ||| ||| || Sbjct 273849 CTGAACAGAATCATCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATG 273790 Query 94792 AAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGT 94851 || || ||||| || |||| ||||||||| | || || || | || |||| Sbjct 273789 CGTCACCGCCCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTGCGC 273730 Query 94852 CTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTAT 94911 |||||| ||| ||| || || | | || ||| || || || | ||| || Sbjct 273729 ATGCCCTTCGAGTCTCCTGAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTAC 273670 Query 94912 TACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC-ACGAATC 94970 ||| ||| | | || || || |||||| ||| || ||||| | || | | Sbjct 273669 CACGCTGCCCTCACCATGTCGGTGCAGCTGGCCA---AGGA-GGAGGGCCCCTACCAGAC 273614 Query 94971 GTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCC 95030 || | || || ||| | |||||||| | |||| |||| | ||| ||| ||||| Sbjct 273613 GTACGAGGGTTCCCCCGTCTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCC 273554 Query 95031 CTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGTGAAA 95088 ||||| ||| | |||||||| ||| | | | || || | | | |||||||| Sbjct 273553 CTCGGATCTCTGGGACTGGGACGCTTTGAAGGAGCAGA--TCAAGCAGCACGGTGTCCGC 273496 Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | || || || || |||||||| || || ||| |||||||| | ||||||||| Sbjct 273495 AACTCTCTTCTCGTCGCGCCCATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAAC 273436 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| || || |||| |||||||||| | ||| | | || || || || || || ||| Sbjct 273435 GAGTGCTTTGAGCCCTACACCTCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTTC 273376 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTGG---GGTGA 95264 | ||| ||||| ||| | ||||| || || | ||||| ||||| | || Sbjct 273375 CAGGTCGTCAACCCTTGGCTCTTGAAGGACCTTGTCGAC-ATGGGTTTGTGGTCCGATGC 273317 Query 95265 CAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACC 95324 || | ||||||| | | || ||||| || ||||||||||||| | || || Sbjct 273316 CA---TGAAGAACCGCATCATTGCCGAGAACGGTTCGATCCAGAACATCCCCAACATCCC 273260 Query 95325 GGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || ||||||| || |||||||| || ||||| ||| | ||||| Sbjct 273259 TACTGAGGTCAAGGCCCTGTACAAGACTGTTTGGGAAATCTCTCAGCG 273212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494705291020160