Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1484 179 4e-40 seq2328 125 7e-24 seq1255 95.1 1e-14 seq2064 82.4 8e-11 >seq1484 Length=366709 Score = 179 bits (198), Expect = 4e-40 Identities = 975/1536 (63%), Gaps = 37/1536 (2%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || ||||| || || | || |||| | || | ||| ||| | | Sbjct 273363 GGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGG 273422 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | |||||| | ||||| ||||| | || || | ||| | || ||||||||| ||| | Sbjct 273423 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGA 273482 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | | | ||| || || | |||||| ||| || | | |||||||| || | ||| ||| Sbjct 273483 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAAAGCGTCCCAGTCC 273541 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 || || |||| || | | ||||||||||||||||| | | || || | |||| Sbjct 273542 CAGAGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGG 273601 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCT--CGA 153324 || | |||| |||| ||| || | |||||| | ||| | | | | || Sbjct 273602 GAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGA-CATGGTGA 273659 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384 | || | | ||| ||||| || ||| | || || || || || || || Sbjct 273660 GGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGACT 273719 Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 || | ||||||||||| || ||||| || || |||||||||| ||||| || |||| Sbjct 273720 CGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGG 273779 Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGAT 153502 | || || | ||||||| | || ||| || | || ||||| ||| ||||| Sbjct 273780 GGCGGTGACGCATGTTGCTGTTGCGAGC-CTC-CTGAACAGGGTAGTGGTTGACGTCGAT 273837 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 ||| |||| |||||||| || || || | || | | | | || |||| ||| || || Sbjct 273838 GATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 273897 Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 | |||| | | || | || ||| | || ||||| || ||||| || Sbjct 273898 GACGCCCTCGTTGTAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGC 273957 Query 153623 CGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681 ||| || |||| ||| ||||| | |||||| | |||||||||| || ||| Sbjct 273958 GACCTCATCAGGCG-CGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGG 274016 Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741 ||| | || | ||| ||||| ||||| ||| || || ||| |||||||| | || Sbjct 274017 TGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGT 274076 Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCC 153798 ||| |||||| || | |||| ||| | ||| || | ||| || || Sbjct 274077 TGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACC---AGAGCTTCTGGGCCTTCATGG 274133 Query 153799 GCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGT 153858 || ||| |||| |||||| |||||||| ||| ||||| ||||||| Sbjct 274134 TCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGT 274193 Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGT 153918 |||||||||| ||||| || |||| | || ||||| || | ||| ||| | Sbjct 274194 AGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCT 274253 Query 153919 TGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGC 153978 || | |||||| || || || | |||||| ||| | ||||| || || Sbjct 274254 CTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAA 274313 Query 153979 AATCCTCCGCGCC---CATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCC 154035 |||||| ||| | ||||| ||||| | | | ||| |||||||||| Sbjct 274314 CCTCCTCCTTGCCGTGGTTCTTGCG---CAGATCCAAGAAGTCGAAGACATCGGCGTGCC 274370 Query 154036 AGGGTTCAATGTAGACGGCCAGGGCACCTTTACG---CTTTCCGCCCTGATCGACGTGGC 154092 | || |||| ||||| ||| | ||||| || || || ||||| ||||||| || Sbjct 274371 AAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGC 274430 Query 154093 GCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCG 154152 | | | ||||||||||| || | |||||| | | ||| | | ||| ||||| || Sbjct 274431 GAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGC 274490 Query 154153 AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGT 154212 || | | |||| ||| || | |||| ||||| | |||||||| ||| | Sbjct 274491 CGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGCCA 274550 Query 154213 ACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCG 154271 ||| || || |||| |||| || || |||||| || || || || || Sbjct 274551 TCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCC 274609 Query 154272 CGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG-CGCGTTCCCGCCGAAAAGAG 154330 | | ||| | ||| || || ||| || || || | || || || ||||| Sbjct 274610 TTCATGTCGACGAGGAAGCAAGAGGACAGCTG-GGCCTGAGGGGTACCAGCGTTGAAGAG 274668 Query 154331 GGTGGGACTCGCGTGCGTAAACAGTTTTTGGCT---CATCATGCGGTACGTTTCGATGGC 154387 |||||| ||||| || || | ||| ||| ||||| | ||| ||||||||| | Sbjct 274669 TGTGGGAGAAGCGTGGGTGAAGAATTT---GCTCGACATCAGGTTGTAGGTTTCGATGAC 274725 Query 154388 GTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACG 154447 | || | || || || || || | ||||| ||||||| ||||||||| || | Sbjct 274726 GCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCT 274785 Query 154448 TTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAA 154507 ||||| | | ||||| ||| | ||| ||| | || | ||| ||| | ||||| Sbjct 274786 CTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAA 274845 Query 154508 ATACTTGTATTCAAAATCTAGCTCATGAGCGATGGC 154543 ||| | ||| | || || | |||| ||||||| Sbjct 274846 ATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 274881 >seq2328 Length=411296 Score = 125 bits (138), Expect = 7e-24 Identities = 346/525 (66%), Gaps = 29/525 (6%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAG-CGACACCGC 52384 || || ||| | ||||| ||||| | ||||| ||||||||||| || | ||| | | Sbjct 57368 GTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATC-AGCGACGAGAAGTC 57310 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 | | | ||| ||||| | || ||||||||| |||||||| | || || ||| Sbjct 57309 CTCCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGC 57250 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 ||| ||| ||||||| | | || | | || | ||||| || ||||| ||| ||| Sbjct 57249 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAA 57190 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTAC----- 52559 |||| | || || || || || || || ||||| |||||||| |||||| |||| Sbjct 57189 CGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTCTCA 57130 Query 52560 ----AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGA 52615 |||| ||| | | | | | | ||||| || ||| || Sbjct 57129 CCTCAAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATTAT--------TGTC----GA 57082 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 || || ||||| ||||||| | || | || ||||| || ||||| ||||| Sbjct 57081 TGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCAT 57022 Query 52676 GAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735 |||| | | ||| ||||||| ||||| || || || ||||| ||||| ||| Sbjct 57021 GAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTT--GCT 56964 Query 52736 CG-GGCA--GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 | |||| | ||| || || ||| || ||||||||| || |||||| | ||||| || Sbjct 56963 CTTGGCAATGACAAGGT-CTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTC 56905 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | |||||||||||||| || |||||||| || | ||| || Sbjct 56904 TCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 56860 >seq1255 Length=235273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || || | Sbjct 166427 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCG 166368 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 166367 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 166308 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||||| ||||||||||| | || | || ||||| || || || || Sbjct 166307 TTGT-CGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTT 166249 Query 138600 TACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 166248 GACGAAGATCTGCATG 166233 >seq2064 Length=287033 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| |||| || || ||||| | || || || | Sbjct 186669 GACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCG 186610 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || |||||||| || || ||||| ||||| || ||||| ||| | || | || | Sbjct 186609 AAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTC-CTGAATCTTCGACTTGAC 186551 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | ||||| ||||| | || | ||| || || |||| ||| | Sbjct 186550 GTTG-TCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTCTTTCCGGTCAAAGTCT 186492 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 186491 TGACGAAGATCTGCAT 186476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496244435301120