Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2064 118 1e-21
seq1255 118 1e-21
seq2328 116 4e-21
seq1448 91.5 1e-13
>seq2064
Length=287033
Score = 118 bits (130), Expect = 1e-21
Identities = 147/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || || || ||||| || | || ||||| ||| || | ||| || ||
Sbjct 186673 CGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCCTCCAACTGCTTGCC 186614
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
|||| | || | ||||||||||||||||| || |||||||||||| || ||| |||
Sbjct 186613 AGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTT 186554
Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
|| |||| || | ||||||| | |||||| || | || | ||| || ||||||| ||
Sbjct 186553 GACGTTG-TCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTCTTTCCGGTCAAAG 186495
Query 127095 TTTTTACAAAAATCTGCAT 127113
| || || || ||||||||
Sbjct 186494 TCTTGACGAAGATCTGCAT 186476
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||||| || | |||||||| || || || ||||| ||| |
Sbjct 186246 CCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 186187
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || |||||| ||||||| |||||||| ||||| ||
Sbjct 186186 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 186127
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || || ||| | |||| |||| ||| || | ||||||
Sbjct 186126 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTG-TCGATGGTATCGGAGGACTCGAC 186068
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|| | ||| | || |||||||| || || || ||
Sbjct 186067 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 186032
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | |||||||| || || || ||||| ||| |
Sbjct 185962 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 185903
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || |||||| ||||||| |||||||| ||||| ||
Sbjct 185902 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 185843
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || || ||| | |||| |||| ||| || | ||||||
Sbjct 185842 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTG-TCGATGGTATCGGAGGACTCGAC 185784
Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089
|| | ||| | || ||||||||
Sbjct 185783 CTCAAGGGTAATGGTCTTGCCGGT 185760
>seq1255
Length=235273
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | |||||||| || || || ||||| |||
Sbjct 166460 CCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 166401
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| ||||||||| |||||| |||||||| || || ||
Sbjct 166400 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 166341
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | | ||| ||
Sbjct 166340 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 166281
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || || || || || || || || || |||||||||
Sbjct 166280 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 166233
>seq2328
Length=411296
Score = 116 bits (128), Expect = 4e-21
Identities = 339/517 (66%), Gaps = 19/517 (4%)
Strand=Plus/Minus
Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129
|||||| | |||| |||||||| ||||| |||||| || |||| || ||| ||
Sbjct 57365 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAA-GTC-CT 57308
Query 47130 C--TGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCT 47187
| | ||| | || | | || |||||| ||||||||| |||||||| || ||
Sbjct 57307 CCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCT 57248
Query 47188 TTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247
| || | || || | | || | || ||||||| || || || || |||||
Sbjct 57247 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACG 57188
Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC----AAC 47303
|||| ||||| | || || || || |||||| |||||||||| ||| |||| | |
Sbjct 57187 AGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTCTCACC 57128
Query 47304 ACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361
| ||| || | | ||| || | | | || ||||| ||| ||| || |
Sbjct 57127 TCAAGAACCGCCCCAGCAAGCAGGTCAT--------TGAG-GACATTATTGTCGATGCTG 57077
Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACG 47421
|| || ||| |||||| | ||||||||||||| || | | || ||||||
Sbjct 57076 TCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACT 57017
Query 47422 CGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT 47481
| | |||||| ||||||| || || ||||| ||||| || | ||| ||
Sbjct 57016 CCAACCTGATGAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCA 56957
Query 47482 ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGG 47541
|| |||| | ||| | | ||||| ||||| |||||| | ||||| || || | |
Sbjct 56956 ATGACAAGGTCTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCG 56897
Query 47542 GCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
||||||||||||| || |||||||| || | ||| ||
Sbjct 56896 GCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 56860
>seq1448
Length=227951
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| || || ||||| || || ||| |||||
Sbjct 173018 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 172959
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| ||||| || ||||||||||||||| ||| || ||||| | |||
Sbjct 172958 AAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 172899
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||||| |||||| || | ||| | || || || ||||| || || || |||
Sbjct 172898 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 172839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475483586871040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |