Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2064 118 1e-21 seq1255 118 1e-21 seq2328 116 4e-21 seq1448 91.5 1e-13 >seq2064 Length=287033 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| || | || ||||| ||| || | ||| || || Sbjct 186673 CGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCCTCCAACTGCTTGCC 186614 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 |||| | || | ||||||||||||||||| || |||||||||||| || ||| ||| Sbjct 186613 AGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTT 186554 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || |||| || | ||||||| | |||||| || | || | ||| || ||||||| || Sbjct 186553 GACGTTG-TCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTCTTTCCGGTCAAAG 186495 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || || || |||||||| Sbjct 186494 TCTTGACGAAGATCTGCAT 186476 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | |||||||| || || || ||||| ||| | Sbjct 186246 CCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 186187 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || |||||| ||||||| |||||||| ||||| || Sbjct 186186 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 186127 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||| | |||| |||| ||| || | |||||| Sbjct 186126 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTG-TCGATGGTATCGGAGGACTCGAC 186068 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| | || |||||||| || || || || Sbjct 186067 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 186032 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||| ||| | Sbjct 185962 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 185903 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || |||||| ||||||| |||||||| ||||| || Sbjct 185902 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 185843 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||| | |||| |||| ||| || | |||||| Sbjct 185842 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTG-TCGATGGTATCGGAGGACTCGAC 185784 Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089 || | ||| | || |||||||| Sbjct 185783 CTCAAGGGTAATGGTCTTGCCGGT 185760 >seq1255 Length=235273 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | |||||||| || || || ||||| ||| Sbjct 166460 CCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 166401 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||||||| |||||| |||||||| || || || Sbjct 166400 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 166341 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| || Sbjct 166340 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 166281 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || || || || || || || ||||||||| Sbjct 166280 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 166233 >seq2328 Length=411296 Score = 116 bits (128), Expect = 4e-21 Identities = 339/517 (66%), Gaps = 19/517 (4%) Strand=Plus/Minus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| |||||||| ||||| |||||| || |||| || ||| || Sbjct 57365 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAA-GTC-CT 57308 Query 47130 C--TGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCT 47187 | | ||| | || | | || |||||| ||||||||| |||||||| || || Sbjct 57307 CCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCT 57248 Query 47188 TTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247 | || | || || | | || | || ||||||| || || || || ||||| Sbjct 57247 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACG 57188 Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC----AAC 47303 |||| ||||| | || || || || |||||| |||||||||| ||| |||| | | Sbjct 57187 AGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTCTCACC 57128 Query 47304 ACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361 | ||| || | | ||| || | | | || ||||| ||| ||| || | Sbjct 57127 TCAAGAACCGCCCCAGCAAGCAGGTCAT--------TGAG-GACATTATTGTCGATGCTG 57077 Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACG 47421 || || ||| |||||| | ||||||||||||| || | | || |||||| Sbjct 57076 TCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACT 57017 Query 47422 CGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT 47481 | | |||||| ||||||| || || ||||| ||||| || | ||| || Sbjct 57016 CCAACCTGATGAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCA 56957 Query 47482 ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGG 47541 || |||| | ||| | | ||||| ||||| |||||| | ||||| || || | | Sbjct 56956 ATGACAAGGTCTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCG 56897 Query 47542 GCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||||| || |||||||| || | ||| || Sbjct 56896 GCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 56860 >seq1448 Length=227951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || || ||| ||||| Sbjct 173018 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 172959 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| ||||| || ||||||||||||||| ||| || ||||| | ||| Sbjct 172958 AAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 172899 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || || || ||||| || || || ||| Sbjct 172898 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 172839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475483586871040