Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq2064 98.7 9e-16
seq1484 82.4 7e-11
>seq2064
Length=287033
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||||||||| | | || |||||||| || |||||||| || || || || |||
Sbjct 186477 ATACCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCG 186418
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | || || || ||| | ||||| || |||||||| ||
Sbjct 186417 GACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGG 186358
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || || || ||||||||||| || |||| || | || | |||||| || || ||
Sbjct 186357 GGGATACCCTCCTTATCTTGAATCTTCGACTTGA-CGTTGTCGATGGTGTCTGACGATTC 186299
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || || |||| || ||||| || || || || || || || |||||
Sbjct 186298 GACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 186248
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| || || | | || || || ||||| || ||||| ||||| || || || ||
Sbjct 186702 CCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 186643
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| ||| ||||| || || || ||| | || | || ||||| || || |||
Sbjct 186642 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGA 186583
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
|| || || || || ||||| || |||| || | || | ||||| |||||||||||
Sbjct 186582 ATACCCTCCTTGTCCTGAATCTTCGACTTGA-CGTTGTCAATCGTGTCCGAAGACTCGAC 186524
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | ||| || ||||| | ||| || || || || |||||
Sbjct 186523 CTCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 186476
>seq1484
Length=366709
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/211 (69%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 124107 CAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAA 124166
||||||||||||||||||| | || | || | ||||||||| || ||| || |
Sbjct 273579 CAGTACGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTGGGACGCTTTGAAGGA- 273521
Query 124167 CGCATATC--GACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAA 124224
||| ||| | ||||||| | || ||||| || | || ||| ||||||||| || |
Sbjct 273520 -GCAGATCAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCCCATGCCGACTGCTA 273462
Query 124225 CCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACG 124284
||| | || || || || |||||||| | ||| ||||| | ||| ||| | |||
Sbjct 273461 GCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACACCTCCAACATCTACC 273402
Query 124285 TGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315
|||||| || | || || || || || ||
Sbjct 273401 AGCGACGTGTTCTTGCTGGTGAGTTCCAGGT 273371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451986837484160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |