Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1484 239 6e-58 seq2328 109 7e-19 >seq1484 Length=366709 Score = 239 bits (264), Expect = 6e-58 Identities = 1059/1655 (64%), Gaps = 55/1655 (3%) Strand=Plus/Plus Query 115719 GATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTG 115778 ||||||||| ||||| |||| ||| ||| | ||| ||||| | ||| || || Sbjct 273220 GATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTG 273279 Query 115779 GATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAAT 115835 ||| || ||| || | | |||| | | |||||| | | ||||| | ||| || Sbjct 273280 GATCGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCAT 273336 Query 115836 CTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 115895 | || |||| || ||| ||||| || |||||||| || || || Sbjct 273337 GTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACG 273396 Query 115896 TCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 115955 || | | |||||||||| ||||| |||||||||||||| ||||| |||||||| || | Sbjct 273397 TCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGA 273456 Query 115956 TGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAAT 116015 ||| || || |||||||| || | |||||| |||||||| ||| | | | || Sbjct 273457 GGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGAT 273516 Query 116016 GCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAA 116075 | ||||| | ||||||||||| || | | || | | |||||| || | Sbjct 273517 CTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCGTA 273576 Query 116076 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 116135 ||||||||| || || || | || || ||||| | |||| || |||||||| ||| Sbjct 273577 CTGGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTT 273636 Query 116136 CGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGC 116192 |||| | | || | | |||||| ||||| || || |||||||| || Sbjct 273637 GGCCAGCTGCACCGACATGG---TGAGGGCAGCGTGGTAGATGGTCTCAAAGAT------ 273687 Query 116193 ATTCATTGCCTTGGCCTCG-TCGGAATCAAACGCGAGACGGCA----CAAA---ATAAAT 116244 ||| ||| | || | || | | | || ||| | |||| || | | || Sbjct 273688 CTTC-TTGTTTAGGTCGCGAGCCTCAGGAGACTCGA-AGGGCATGCGCAGAGCCAGGAAG 273745 Query 116245 ACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGA 116304 |||| || ||||| ||||||||||| ||||| ||||| || | ||| || || ||| Sbjct 273746 GCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGA 273805 Query 116305 GCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 116364 || || || || || || ||||| | || || || || | |||||| Sbjct 273806 GCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACC 273865 Query 116365 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG---ACATAC 116421 | |||| || || ||||| | | | || | || ||| | | | ||| | Sbjct 273866 TGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACGC---CCTCGTTGTAGTCAACAAAG 273922 Query 116422 TTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCT 116481 | || | ||||| || ||||| || || || | | |||||| | |||||| Sbjct 273923 GTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCG 273982 Query 116482 ATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 116541 || || ||||| || | || || || |||||||| | |||||| || || ||| Sbjct 273983 ATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTG 274042 Query 116542 GTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 116601 ||| ||||||||||||||||| | || | || ||||| || |||| || ||| Sbjct 274043 CGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGG 274102 Query 116602 ATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTG----GCTCGCCCCTCCTCCT 116656 || || | ||| | | || | ||| || ||| ||| || |||| | || || Sbjct 274103 ATGGCATACCAGAGCTTCTG-GGCCTTCA---TGGTCTTGCGACCCTTGCCCAT-CTGCT 274157 Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCC 116715 ||||||| ||| | |||||| ||||| || || ||| || | || || || | Sbjct 274158 CGTACTTCTCGTACAAGGCCTCGAACTCCTC-GCCGTAGCAGTCGGCCAGGCCAGGGCAC 274216 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | | || || | ||||| ||| | || || ||| |||| ||||||||||||||| Sbjct 274217 TCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCG 274276 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835 || |||||||| || ||| || || || ||| | || || | || || || Sbjct 274277 GGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTG 274336 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895 |||| ||||| ||||| | || ||| |||||||| || || ||||| | |||| | Sbjct 274337 CGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCA 274396 Query 116896 CCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGC 116952 ||| ||| ||| |||||| || || | || || ||| || || || ||| Sbjct 274397 CCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGC 274456 Query 116953 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTG 117012 || || | || ||| | || || || || || |||| || | |||| | | Sbjct 274457 ATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGG 274516 Query 117013 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTG 117072 | || | || | |||||| || || ||| ||| ||||| ||||| | || Sbjct 274517 ATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTG 274576 Query 117073 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 117132 || || ||||||| || || || ||||| |||| | ||| ||||||||| ||| Sbjct 274577 AGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGAC 274636 Query 117133 ATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA--TA 117189 | || ||||| || ||||||||||||||||| || || | |||||| |||| | | Sbjct 274637 AGCTG-GGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTT 274695 Query 117190 CCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCG 117249 || |||||| | |||||| || | ||| || ||| || || ||||| Sbjct 274696 GCT--CGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCA 274753 Query 117250 ATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGG 117309 | | ||| ||||| | ||||| |||||| | || | | || || ||| | || Sbjct 274754 ACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGG 274813 Query 117310 AGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 ||||| ||||||||||||||| || ||||| Sbjct 274814 AGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATA 274848 >seq2328 Length=411296 Score = 109 bits (120), Expect = 7e-19 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||||||||| ||||| |||||||| || || |||||| |||||| Sbjct 57148 GCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCA 57207 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||| |||||||| | |||||| || | || | || ||||||||| Sbjct 57208 GGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATA 57267 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---A 127696 ||||| || ||||| |||| || |||| ||| ||||| |||||| || Sbjct 57268 CCCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGA---GGACTTCTCGTCGCTG 57324 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 | |||||||| ||||| | ||||| || ||| || || || || Sbjct 57325 ATCCACTTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGAACTGT 57371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613484991039360