Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1484 176 7e-39 >seq1484 Length=366709 Score = 176 bits (194), Expect = 7e-39 Identities = 460/683 (67%), Gaps = 18/683 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || ||||||||||||| | || | |||| ||||| | | ||| ||||||||| Sbjct 273016 CTGGTCGACTGTGAACTGAATGG-GCGCAGCAGCAG-CCTGCGTGCGCAGGTAGTACATG 273073 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || || || ||| ||| | ||||||| | | ||||| || | | Sbjct 273074 CCCGTCTTCAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATTTTGCCCATGGTC 273133 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 ||||| |||||||||||| || ||||| ||||| ||||| ||| || || || || Sbjct 273134 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAA-GGCACCACGGTCGGC 273192 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 ||||| | | | ||| ||| || || ||||| || |||||| ||| | | || Sbjct 273193 AGCCATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAGGGCCTTGAC 273252 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | ||| | | | | || ||| ||||| ||||| ||||| || | | || Sbjct 273253 CTCAGTAGGGATGT-TGGGGATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCT 273311 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | | || ||||| |||| || || ||| || || ||||||| || Sbjct 273312 TCATGGCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGA 273371 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| || || || | || || | ||| | | | |||| |||| | || || || Sbjct 273372 CCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGC 273431 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||||||||| || ||||| | |||||| || || |||||||| || | ||| || | Sbjct 273432 ACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAG 273491 Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTC---GTGCATC 204370 ||||||| ||||||| | | || |||| ||||| || | |||||| | | ||| Sbjct 273492 AGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAAAGCGTCCCAGTCCCAGAG-ATC 273549 Query 204371 GCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCC 204430 | ||| || || |||||||||| |||| | |||||| ||| ||| ||| ||| Sbjct 273550 CGA--GGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGAACCC 273607 Query 204431 TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCGTG 204489 | ||||||| | || || ||||| | |||||| |||| ||| || | ||| Sbjct 273608 TCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGC-TGCACCGACATGGTGAGGGCAGC 273666 Query 204490 ATAGTACATGGTCTCAAAGATCT 204512 | ||| |||||||||||||||| Sbjct 273667 GTGGTAGATGGTCTCAAAGATCT 273689 Score = 113 bits (124), Expect = 7e-20 Identities = 476/738 (64%), Gaps = 24/738 (3%) Strand=Plus/Plus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| || ||||| ||| | || || ||||| ||| ||| || || || Sbjct 274156 CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 274215 Query 205120 TTTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGT 205178 | ||||| ||||| |||| ||| | | || ||| | ||||||| ||| || |||| Sbjct 274216 CTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCT-ACCCTCTTCATGAAGAGGT 274274 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 || ||||| || || || || |||||||| | || | || | || |||||| Sbjct 274275 CGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCT 274334 Query 205239 TTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297 | || |||| ||| || | | ||||||||||| ||||| | | | ||| | Sbjct 274335 TGCGCAGATCCAAG-AAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAA 274393 Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357 || || || | ||||| ||||||||||| || ||||| | |||||| || || Sbjct 274394 GCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGG 274453 Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCC 205417 ||||| || || | |||||| | ||| ||||| |||| | || ||||| | Sbjct 274454 AGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCC----GGT 274509 Query 205418 CTCACGTTGGAGATGGCCG----CGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC- 205472 |||| | |||| || ||||| || || | ||||| |||| ||||| Sbjct 274510 GGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 274569 Query 205473 ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAG 205531 | ||||| || ||| |||||| || | || || || ||| || |||| || || || Sbjct 274570 AGTCTTG-AGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCA-TGTCGACGAGGAAG 274627 Query 205532 CACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 || || | ||||| ||| ||| || |||| |||||| ||||| |||||| || Sbjct 274628 CAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTG 274687 Query 205592 AAGCGCTTCTCGCTCAAACACC----TGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCC 205647 ||| || |||| ||| | ||||||| || | |||| ||| | ||| || Sbjct 274688 AAGAATTT---GCTC-GACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACC 274743 Query 205648 GTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTT 205707 ||||| | ||||| | ||||| | ||| || |||||||| | | | ||| Sbjct 274744 CCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTC 274803 Query 205708 CACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTC 205767 | |||||| || || | |||||| | ||| || | | ||| | | | || || |||| Sbjct 274804 AAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTC 274863 Query 205768 CCTAGAATAGTCGATGGC 205785 | |||| ||||||| Sbjct 274864 GCGGTCATAGACGATGGC 274881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795126415381760