Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1448 138 1e-27
seq1255 136 4e-27
seq2064 132 5e-26
>seq1448
Length=227951
Score = 138 bits (152), Expect = 1e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| |
Sbjct 173020 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 172961
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||||||||||||||||| || | || |||||||||| |||||| ||||| |
Sbjct 172960 TCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 172901
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | |||||| || || || || | || ||||| || |||||||| || || || |
Sbjct 172900 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 172841
Query 46584 A 46584
|
Sbjct 172840 A 172840
>seq1255
Length=235273
Score = 136 bits (150), Expect = 4e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||| || | ||| |||||| ||||| ||||||||||| || ||||| ||
Sbjct 166448 CGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 166389
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||| || ||||| |||| |||||||||||| | || | || |||||||
Sbjct 166388 TCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 166329
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | |||||| || ||||| || | |||||
Sbjct 166328 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 166269
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || ||||| || || || || ||||| |||||
Sbjct 166268 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 166234
>seq2064
Length=287033
Score = 132 bits (146), Expect = 5e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||||| ||| ||||| || || ||||||||||| || ||||| |||| ||
Sbjct 186456 ACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 186397
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| ||||||||||||||||||| || | | |||||| ||
Sbjct 186396 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGA 186337
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||||| ||| | | | ||||| |||||| || || | || || || ||
Sbjct 186336 ATCTTCGACTTGA-CGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTT 186278
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || ||||| ||||| |||||
Sbjct 186277 GCCAGTGAGGGTCTTAACGAAGATCTGCAT 186248
Score = 129 bits (142), Expect = 7e-25
Identities = 153/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| || | ||| |||||| ||||| ||||||||||| || ||||| |
Sbjct 186235 ACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 186176
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || |||||||| || ||||| ||||||||||||||||||| || | || ||||||
Sbjct 186175 GTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTT 186116
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| ||||| ||| | ||| | | | || ||| || || || || | ||||
Sbjct 186115 GTCCTGAATCTTGGACTTCA-CGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGA 186057
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAAC 46581
|||| ||||| || ||||| || ||
Sbjct 186056 TGGTCTTGCCGGTAAGCGTCTTGAC 186032
Score = 109 bits (120), Expect = 6e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || |||||||| || |||||
Sbjct 185927 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAA 185868
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509
||||||||||||||||||| || | || |||||||||| |||||
Sbjct 185867 GATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTT 185820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565217938369920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |