Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2328 154 1e-32 seq2064 132 5e-26 seq1255 127 2e-24 seq1448 111 2e-19 >seq2328 Length=411296 Score = 154 bits (170), Expect = 1e-32 Identities = 200/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| ||| || | || ||||| | ||||||||| |||||| || Sbjct 57478 GTAGGTGTCGATGAGCAACGAGTAGGTCTCTGAGTGGATGTTCTCCATCATGATTTGGAA 57537 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||| || ||||| || |||||| |||||| || || ||| |||||||||| || Sbjct 57538 GCCATAGAAGCAACGGGCCTCGGGCACCTGGACCTCGCCGCTGAAGCGCTCGACCAAGTT 57597 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| ||||| ||| || ||||| ||||| || | |||| |||||| | Sbjct 57598 CTCGTTGACAATGCCATCGGAAGCAGCGAAGAAGGCGAGGATGTGCGAGATGAAGTACTT 57657 Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||| || | | ||||||| | ||||||||||| || | |||||| Sbjct 57658 CTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTC 57717 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || || ||||| || || |||||||| Sbjct 57718 GGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACAT 57753 Score = 125 bits (138), Expect = 7e-24 Identities = 325/485 (67%), Gaps = 18/485 (4%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || ||| || ||| | |||||| || || || ||| Sbjct 56875 TTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATAAAGTCGAACGGATTG 56934 Query 132685 GCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||| |||| |||| | || | || | || | ||| || |||||| Sbjct 56935 GAAGACTTGTAGACCTTGTCATTGCCAAG-AG--CAACCAAGAGACGGTCAGCGACGAAC 56991 Query 132742 TCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCT 132798 || ||||| ||| ||| |||| | | || | || |||||| |||| ||||| || Sbjct 56992 TCAATGTACTGCTTCATCAGGTT--GGAGTTCATGCCGAGCAGAGCGCAA-GGCAGAGCC 57048 Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858 ||||| || || |||||||| ||| || ||| | || ||| || | | | Sbjct 57049 TCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGACAATAATGTCCTCAATGACCTGC 57108 Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 ||| || || | | | || | | | | ||| ||||||||| || | ||| Sbjct 57109 TTGCTGGGGCGGTTCTTGAGGTGAGAGTAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCC 57168 Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 || || | || ||||| |||||| ||| |||| || ||||| || || || || ||| Sbjct 57169 TCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAGACCACGCTTCTTG 57228 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || |||| |||||| || ||||||| ||||||||||| ||||| || Sbjct 57229 AGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCGAAGGCA 57288 Query 133039 ACCAGGCGCTCGCCGAACGTGG-CTTCT--TTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 || ||||||| | |||| | || ||||| | ||| |||||| ||| ||||| ||| Sbjct 57289 ACGAGGCGCTGGGCGAAGGAGGACTTCTCGTCGCT---GATCCACTTCAGAGCCCAGTCG 57345 Query 133096 GCCTT 133100 ||||| Sbjct 57346 GCCTT 57350 >seq2064 Length=287033 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || ||||| || ||||| ||||||||| | || |||||| || |||| | | | Sbjct 186030 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCG 186089 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || || | ||||| ||||| |||||| ||||||| ||||| | Sbjct 186090 ACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 186148 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || |||| |||||||| ||||||||||||||| ||| Sbjct 186149 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAG 186208 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || |||||||||||| Sbjct 186209 GAGTCTACCCTCCACTTGGTGCTGCGT 186235 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||| ||| | || |||||| || |||| | | | | |||| | || Sbjct 185758 TCACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACG-TGAAG 185816 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || || | ||||| ||||| |||||| ||||||| ||||| | || | ||| || Sbjct 185817 TCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGT 185876 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| |||||||| ||||||||||||||| ||||| | || || Sbjct 185877 AAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTT 185936 Query 38445 CATTTGGTGCTGCG 38458 || ||||| || || Sbjct 185937 CACTTGGTTCTCCG 185950 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || || ||| | || ||||| | | Sbjct 186248 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 186307 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | || || ||||| || ||| ||||||| Sbjct 186308 GACACCATCGACAACG-TCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCA 186366 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| ||||| || |||| |||||||| ||||||||| Sbjct 186367 GCAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAA 186426 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || |||||| | || |||||| | || || || Sbjct 186427 CATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCG 186462 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || || ||||| | || |||||| | | Sbjct 186476 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 186535 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || || || | ||||| ||||| ||||| |||| || Sbjct 186536 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCA 186594 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| ||||| ||| |||| || | |||||| | | |||||||| Sbjct 186595 GCAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAA 186654 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| ||||||| || | || || ||| || | || || Sbjct 186655 CATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGG 186702 >seq1255 Length=235273 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 166234 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 166293 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| | ||||| Sbjct 166294 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 166353 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| ||||||||| |||||||||| Sbjct 166354 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 166413 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || ||||| ||||| Sbjct 166414 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCG 166448 >seq1448 Length=227951 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || | |||| | Sbjct 172840 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 172899 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| ||||||| ||||| | Sbjct 172900 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 172959 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| ||| Sbjct 172960 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 173019 Query 38433 G 38433 | Sbjct 173020 G 173020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500154693744640