Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq215 239 6e-58
seq2328 145 1e-29
seq2064 145 1e-29
seq1620 100 4e-16
>seq215
Length=95452
Score = 239 bits (264), Expect = 6e-58
Identities = 486/722 (67%), Gaps = 0/722 (0%)
Strand=Plus/Minus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | ||||||||| ||||| | || ||||| || || ||||| ||||||||
Sbjct 9150 TCACCGGACAGGATGGCGGCCTGGACAGCGGCACCGTAGGCAACGGCCTCGTCGGGGTTG 9091
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || | || || ||||| || || || || | | | || || |||
Sbjct 9090 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGATGCGGGGG 9031
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || || || ||||||| || || || | || | || || |||||||| | |
Sbjct 9030 ATACGGGTGGAACCTCCGACCAGGACAATCTCGTGGACCTGGGACTTGTCGATCTTGGCG 8971
Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249
|| || ||||| || | || ||||||| |||| || || |||
Sbjct 8970 TCGGACAGGACGCGGTCGACGGGCTGGATGGTCGAGCGGAACAGGTCCTGGCAGAGCTCC 8911
Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309
|| || || |||||||| ||||| || ||||| || | ||| ||| | | ||| || ||
Sbjct 8910 TCGAAGCGGGCACGGGTGATGGACGTGTAGAAGTCGATGCCCTCGAACAGCGAGTCGATC 8851
Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369
|| |||| || || || | || || | || ||||| || ||||| || || || ||
Sbjct 8850 TCGATGGAGGTCTGCGCGGAGGAGGACAGAGTGCGCTTGGCACGCTCGCAAGCGGTGCGG 8791
Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429
| ||| || ||||| || | ||| || | || ||||| || || || || |||||
Sbjct 8790 AGACGGCGCAGGGCGCGGGCGTTGGTAGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCG 8731
Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489
| |||||| | ||| | || || || |||||||||||||| || || ||
Sbjct 8730 TTGACGAAGTGGTTGACGAGGCGGTTGTCAAAGTCCTCACCACCCAAGTGGGTGTCACCA 8671
Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549
||||||| ||||| || ||||| || | |||||| | | | || ||||| || |||
Sbjct 8670 GCGGTCGACTTGACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAAGGTA 8611
Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609
||||| || || || || ||||| ||||| ||| | || ||||| || ||||||
Sbjct 8610 CCACCGCCGAGATCGAAGATGAGCACGTTGCGCTCGCCCTCGGCCTTCTTGTCCAGACCG 8551
Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669
||||| || || || || ||||| || || || || || || ||| ||||| |||||
Sbjct 8550 TACGCAATGGCGGCAGCGGTTGGCTCGTTGATGATGCGGAGCACGTTGAGGCCGGCAATG 8491
Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729
| || || || || || || || || || ||||| |||||||| || || || ||
Sbjct 8490 AGACCGGCGTCCTTGGTAGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGAACGGTGACA 8431
Query 7730 AC 7731
||
Sbjct 8430 AC 8429
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/188 (72%), Gaps = 3/188 (2%)
Strand=Plus/Minus
Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957
||||||||| | || |||| ||| ||||| | ||||| |||||||| || ||
Sbjct 8210 TTCATATCGGCCTGCACCTCCGAGTCGTTGAACTTGCGGCCGATCAGACGCTTGGCGTCG 8151
Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017
|| || ||||| | |||||||| || |||||||| ||||| || ||||| || ||
Sbjct 8150 AACACCGTGTTGTGCGGGTTCATCGCGACCTGGTTCTTGGCCGCATCACCGATCAGGCGC 8091
Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077
|| | | | ||||| ||||| |||| || || || ||||| || || || || |||
Sbjct 8090 TCCGTGT---CAGTAAATCCGACGAACGACGGCGTGGTGCGATTTCCCTGATCATTTGCA 8034
Query 8078 ATAATTTC 8085
||||||||
Sbjct 8033 ATAATTTC 8026
>seq2328
Length=411296
Score = 145 bits (160), Expect = 1e-29
Identities = 344/516 (67%), Gaps = 13/516 (3%)
Strand=Plus/Minus
Query 7247 TCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
||||| ||||| |||||||| || || || ||| ||| || ||| | | ||
Sbjct 351900 TCCTCGAAACGGGCACGGGTGATCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 351844
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
|| || |||||||| || || || || | ||| || ||||| || ||||| || |
Sbjct 351843 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 351786
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
| || || | ||| || || ||||| |||| ||||| | || ||||| || || |
Sbjct 351785 CAGTGCGGAGACGGCGGAGAGCACGGGGGTCGCCGGAGAGGTCCTTCTTGGTCTTGCGCT 351726
Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481
|| || | | |||| ||||| | | |||||||| | |||||||||||| |
Sbjct 351725 GGAAGTCCTTCTTGCAGTGGTCCAGGAGGTTGGTGTCGAAATCCTGACCACCCAAGTGGG 351666
Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541
| || || || || || ||||| |||| ||| || | ||||| | | |||||||
Sbjct 351665 TGTCACCGGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 351606
Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598
| || ||||||||||||| ||| | ||||| ||||| || | | | |||
Sbjct 351605 CGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 351546
Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658
| | |||||||| || || || || || || || || || || ||||| || ||| |
Sbjct 351545 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 351486
Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718
|||| || || | | ||||| || || || || || || ||||| |||||||| |
Sbjct 351485 GGCCGGCGATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCAG 351426
Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
|||| || | ||| || | | || ||||| ||||
Sbjct 351425 GGACGGTGATGACAGCCTTCTCAACCTTCTTGCCGA 351390
>seq2064
Length=287033
Score = 145 bits (160), Expect = 1e-29
Identities = 248/356 (70%), Gaps = 9/356 (3%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||||||| || || || || || || ||| || |||| |||
Sbjct 45381 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTAGCCAAGACCTCGAAGACACCC 45322
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTC---AAAAATGAGT 7573
|| ||| | || |||||||| || ||||||||||| ||||| || |||||
Sbjct 45321 TGGTCGATGGAGAGCAGGGAAACATCGAAGGTACCACCACCAAGGTCGTAAACAATGA-- 45264
Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633
| || ||| |||| | |||| || |||||||| |||||||| || || || ||
Sbjct 45263 TCTGGCG-CTCGCCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCAGTGGGC 45208
Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693
|| || | ||| ||||| ||| || || ||||| | | ||||| || || || ||
Sbjct 45207 TCGTTGACAATGCGAAGGACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGG 45148
Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753
|| || ||||| |||||||| ||||| || ||||| |||| ||||| ||||| |
Sbjct 45147 CGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTAACGACGGCGTGGGTGACCTTCTTGCTC 45088
Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|| || | || |||| || ||||| ||| || | ||| | |||| ||| ||
Sbjct 45087 AGGTAGGCCTCGGCGACCTCCTTCATCTTGCCCAGGATCATGGCGGAAACCTCCTC 45032
>seq1620
Length=461450
Score = 100 bits (110), Expect = 4e-16
Identities = 223/335 (67%), Gaps = 6/335 (2%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||||| ||| ||||| || ||| | ||||| || |||| |||
Sbjct 23870 TCAAAGTCCTCACCACCCAGGTGGGTATCACCGTTGGTAGACTTGACCTCGAAGACACCG 23811
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || | | | || | ||| || ||||||||||| || || | | | |||
Sbjct 23810 TTCTGGATCTCGAGAACGGAGATATCGAAAGTACCACCACCAAGATCGTAGACGGCGACG 23751
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| | ||| | | ||| || |||||||| || | ||| || || || || ||
Sbjct 23750 AT------GCGGTCATCCTCCTTCTCCAGACCGTAGGCCAGAGCAGCGGCAGTGGGCTCG 23697
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|||| || ||| ||| ||||||||| ||||| | ||||| || || || || ||
Sbjct 23696 TTAACAACACGGAGAACGTTCAGGCCGGCAATCTGACCGGCATCCTTGGTAGCCTGACGC 23637
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || || || |||||||| ||||| || ||||| |||| | |||| ||| ||
Sbjct 23636 TGGGAGTCATTGAAGTAGGCAGGGACGGTGACGACGGCGTTCTTGACAGGCTTGGACAGG 23577
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791
|| | || ||| | || ||||| ||| | || ||
Sbjct 23576 TAGGCCTCAGCGGTCTCCTTCATCTTGTTGAGGAC 23542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635109808192640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |