Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq215 239 6e-58 seq2328 145 1e-29 seq2064 145 1e-29 seq1620 100 4e-16 >seq215 Length=95452 Score = 239 bits (264), Expect = 6e-58 Identities = 486/722 (67%), Gaps = 0/722 (0%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||||||||| ||||| | || ||||| || || ||||| |||||||| Sbjct 9150 TCACCGGACAGGATGGCGGCCTGGACAGCGGCACCGTAGGCAACGGCCTCGTCGGGGTTG 9091 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || || || || | | | || || ||| Sbjct 9090 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGATGCGGGGG 9031 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || ||||||| || || || | || | || || |||||||| | | Sbjct 9030 ATACGGGTGGAACCTCCGACCAGGACAATCTCGTGGACCTGGGACTTGTCGATCTTGGCG 8971 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || ||||| || | || ||||||| |||| || || ||| Sbjct 8970 TCGGACAGGACGCGGTCGACGGGCTGGATGGTCGAGCGGAACAGGTCCTGGCAGAGCTCC 8911 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || |||||||| ||||| || ||||| || | ||| ||| | | ||| || || Sbjct 8910 TCGAAGCGGGCACGGGTGATGGACGTGTAGAAGTCGATGCCCTCGAACAGCGAGTCGATC 8851 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || || | || ||||| || ||||| || || || || Sbjct 8850 TCGATGGAGGTCTGCGCGGAGGAGGACAGAGTGCGCTTGGCACGCTCGCAAGCGGTGCGG 8791 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | ||| || ||||| || | ||| || | || ||||| || || || || ||||| Sbjct 8790 AGACGGCGCAGGGCGCGGGCGTTGGTAGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCG 8731 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | |||||| | ||| | || || || |||||||||||||| || || || Sbjct 8730 TTGACGAAGTGGTTGACGAGGCGGTTGTCAAAGTCCTCACCACCCAAGTGGGTGTCACCA 8671 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 ||||||| ||||| || ||||| || | |||||| | | | || ||||| || ||| Sbjct 8670 GCGGTCGACTTGACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAAGGTA 8611 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 ||||| || || || || ||||| ||||| ||| | || ||||| || |||||| Sbjct 8610 CCACCGCCGAGATCGAAGATGAGCACGTTGCGCTCGCCCTCGGCCTTCTTGTCCAGACCG 8551 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 ||||| || || || || ||||| || || || || || || ||| ||||| ||||| Sbjct 8550 TACGCAATGGCGGCAGCGGTTGGCTCGTTGATGATGCGGAGCACGTTGAGGCCGGCAATG 8491 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | || || || || || || || || || ||||| |||||||| || || || || Sbjct 8490 AGACCGGCGTCCTTGGTAGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGAACGGTGACA 8431 Query 7730 AC 7731 || Sbjct 8430 AC 8429 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||||||| | || |||| ||| ||||| | ||||| |||||||| || || Sbjct 8210 TTCATATCGGCCTGCACCTCCGAGTCGTTGAACTTGCGGCCGATCAGACGCTTGGCGTCG 8151 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| | |||||||| || |||||||| ||||| || ||||| || || Sbjct 8150 AACACCGTGTTGTGCGGGTTCATCGCGACCTGGTTCTTGGCCGCATCACCGATCAGGCGC 8091 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | | | ||||| ||||| |||| || || || ||||| || || || || ||| Sbjct 8090 TCCGTGT---CAGTAAATCCGACGAACGACGGCGTGGTGCGATTTCCCTGATCATTTGCA 8034 Query 8078 ATAATTTC 8085 |||||||| Sbjct 8033 ATAATTTC 8026 >seq2328 Length=411296 Score = 145 bits (160), Expect = 1e-29 Identities = 344/516 (67%), Gaps = 13/516 (3%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 ||||| ||||| |||||||| || || || ||| ||| || ||| | | || Sbjct 351900 TCCTCGAAACGGGCACGGGTGATCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 351844 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| || || || || | ||| || ||||| || ||||| || | Sbjct 351843 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 351786 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | ||| || || ||||| |||| ||||| | || ||||| || || | Sbjct 351785 CAGTGCGGAGACGGCGGAGAGCACGGGGGTCGCCGGAGAGGTCCTTCTTGGTCTTGCGCT 351726 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || | | |||| ||||| | | |||||||| | |||||||||||| | Sbjct 351725 GGAAGTCCTTCTTGCAGTGGTCCAGGAGGTTGGTGTCGAAATCCTGACCACCCAAGTGGG 351666 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || || ||||| |||| ||| || | ||||| | | ||||||| Sbjct 351665 TGTCACCGGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 351606 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598 | || ||||||||||||| ||| | ||||| ||||| || | | | ||| Sbjct 351605 CGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 351546 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| || || || || || || || || || || ||||| || ||| | Sbjct 351545 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 351486 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||| || || | | ||||| || || || || || || ||||| |||||||| | Sbjct 351485 GGCCGGCGATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCAG 351426 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 |||| || | ||| || | | || ||||| |||| Sbjct 351425 GGACGGTGATGACAGCCTTCTCAACCTTCTTGCCGA 351390 >seq2064 Length=287033 Score = 145 bits (160), Expect = 1e-29 Identities = 248/356 (70%), Gaps = 9/356 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || || ||| || |||| ||| Sbjct 45381 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTAGCCAAGACCTCGAAGACACCC 45322 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTC---AAAAATGAGT 7573 || ||| | || |||||||| || ||||||||||| ||||| || ||||| Sbjct 45321 TGGTCGATGGAGAGCAGGGAAACATCGAAGGTACCACCACCAAGGTCGTAAACAATGA-- 45264 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || ||| |||| | |||| || |||||||| |||||||| || || || || Sbjct 45263 TCTGGCG-CTCGCCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCAGTGGGC 45208 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | ||| ||||| ||| || || ||||| | | ||||| || || || || Sbjct 45207 TCGTTGACAATGCGAAGGACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGG 45148 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||| ||||| || ||||| |||| ||||| ||||| | Sbjct 45147 CGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTAACGACGGCGTGGGTGACCTTCTTGCTC 45088 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || | || |||| || ||||| ||| || | ||| | |||| ||| || Sbjct 45087 AGGTAGGCCTCGGCGACCTCCTTCATCTTGCCCAGGATCATGGCGGAAACCTCCTC 45032 >seq1620 Length=461450 Score = 100 bits (110), Expect = 4e-16 Identities = 223/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||| ||| ||||| || ||| | ||||| || |||| ||| Sbjct 23870 TCAAAGTCCTCACCACCCAGGTGGGTATCACCGTTGGTAGACTTGACCTCGAAGACACCG 23811 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | || | ||| || ||||||||||| || || | | | ||| Sbjct 23810 TTCTGGATCTCGAGAACGGAGATATCGAAAGTACCACCACCAAGATCGTAGACGGCGACG 23751 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | ||| | | ||| || |||||||| || | ||| || || || || || Sbjct 23750 AT------GCGGTCATCCTCCTTCTCCAGACCGTAGGCCAGAGCAGCGGCAGTGGGCTCG 23697 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 |||| || ||| ||| ||||||||| ||||| | ||||| || || || || || Sbjct 23696 TTAACAACACGGAGAACGTTCAGGCCGGCAATCTGACCGGCATCCTTGGTAGCCTGACGC 23637 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || |||||||| ||||| || ||||| |||| | |||| ||| || Sbjct 23636 TGGGAGTCATTGAAGTAGGCAGGGACGGTGACGACGGCGTTCTTGACAGGCTTGGACAGG 23577 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 || | || ||| | || ||||| ||| | || || Sbjct 23576 TAGGCCTCAGCGGTCTCCTTCATCTTGTTGAGGAC 23542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635109808192640