Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1484 260 2e-64 seq2328 141 1e-28 >seq1484 Length=366709 Score = 260 bits (288), Expect = 2e-64 Identities = 960/1493 (64%), Gaps = 27/1493 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| | |||||| || || || |||| || Sbjct 274782 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 274723 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || || ||| || |||||| | | |||| |||||| | || || |||||| Sbjct 274722 ATCGAAACCTACAACCTGATGTCGAGCAAATTCTTCACCCACGCTTCTCCCACACTCTTC 274663 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || |||| ||||| ||| ||||| | | | |||||||| Sbjct 274662 AACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGAC 274603 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | || || |||| ||| |||| || ||| ||||| ||| ||| ||| Sbjct 274602 TCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGT 274543 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || || || | || | ||| || | |||| | || |||| || || || Sbjct 274542 GGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCTATATTGCCGGCACTAAC 274483 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||| | | || ||||| || || || ||| ||| || ||||| || Sbjct 274482 GGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTC 274423 Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| | ||| ||| ||| || |||| |||| |||||||| |||||||| Sbjct 274422 GACCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCC 274363 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 ||| || | || ||| | || |||| ||||| || | ||||||| || ||| Sbjct 274362 GATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCCGT 274303 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || || ||| ||||||||||||||| || |||||||||||||| || ||| ||| || Sbjct 274302 GACCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGAGAAGAACGGG 274243 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAG 112208 | ||| ||||| | || || || || || || || |||| | || |||||| Sbjct 274242 GACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGGAG 274183 Query 112209 TTTGAAGCCCTCTACACAAAGTACGAG--GAAG----AAAGTCGGGCGACTGCGACGGTG 112262 || || ||| | ||| ||||||||| || | | |||| ||| || || Sbjct 274182 TTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCATGAAGG-C 274124 Query 112263 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 |||| || | ||| | || || ||| || | || ||||||||||| | || | Sbjct 274123 CCAGAAGC-----TCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCTTTC 274069 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||| ||||| || ||| |||| ||||| || || ||||| | || ||| Sbjct 274068 ATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATCCGC 274009 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 || ||||||||||| || || ||| | || | | |||||| || || || Sbjct 274008 AGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTCGCGGTCTGC 273949 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT--GATT 112500 ||||| || || |||| | |||| | ||| || | | | || | | | | | || | Sbjct 273948 AACCTGGCCTCGCTCGCCTTGCCCACCTTTGTTGA-CTACA-ACGAGGGCGTCTACGACT 273891 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || |||||||| || || | ||| ||||| |||||| | || || Sbjct 273890 TCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGAATCATCGACG 273831 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || ||||| ||| || ||||| || || ||| | ||||| || ||||||| Sbjct 273830 TCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGTCACCGCCCCATTGGTC 273771 Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGAC 112679 |||||||||| ||||| || |||| ||| | || || ||| | || || || Sbjct 273770 TCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTG-CGCATGCCCTTCGAGTCTCCT 273712 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || || || | || | || |||||||| || || ||||| || || | Sbjct 273711 GAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTACCACGCTGCCCT---CACC 273655 Query 112740 AGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 | |||| || |||| ||| || || || || | || | |||||||| || | Sbjct 273654 ATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCCGTC 273595 Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGG 112856 || || || | || || | || |||||| | | || || | || || |||||| Sbjct 273594 TCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTGG 273535 Query 112857 GACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 112916 |||||| | ||||| | |||||| || | ||| | || ||| |||| | | || || Sbjct 273534 GACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCCC 273475 Query 112917 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 112976 ||||| || || |||| | || |||||||| || || || |||||||| |||||||| Sbjct 273474 ATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACACC 273415 Query 112977 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTC 113036 | |||||||| | | || | || || || ||||| | | |||||| ||| Sbjct 273414 TCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTTCCAGGTCGTCAACCCTTGGCTC 273355 Query 113037 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089 || | ||||| || || ||| | |||||| | | |||||| | | ||| Sbjct 273354 TTGAAGGACCTTGTCGACATGGGTTTGTGGTCCGATGCCATGAAGAACCGCAT 273302 >seq2328 Length=411296 Score = 141 bits (156), Expect = 1e-28 Identities = 174/236 (74%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 102155 |||||| |||||||| || || | ||||| || || |||||| |||||||| | Sbjct 57377 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGC 57321 Query 102156 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 102215 || ||||| ||||| || |||| ||| | || || || || ||||||||| Sbjct 57320 GACGAGAAGTCC---TCCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATC 57264 Query 102216 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 102275 |||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| ||| Sbjct 57263 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGT 57204 Query 102276 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || ||||||||||||||| ||||||||||| ||||| |||||| || ||||| Sbjct 57203 CTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGC 57148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620719929125120