Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 260 2e-64
seq2328 141 1e-28
>seq1484
Length=366709
Score = 260 bits (288), Expect = 2e-64
Identities = 960/1493 (64%), Gaps = 27/1493 (2%)
Strand=Plus/Minus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| ||||| | |||||| || || || |||| ||
Sbjct 274782 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 274723
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| || || ||| || |||||| | | |||| |||||| | || || ||||||
Sbjct 274722 ATCGAAACCTACAACCTGATGTCGAGCAAATTCTTCACCCACGCTTCTCCCACACTCTTC 274663
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
||||||||||| || |||| ||||| ||| ||||| | | | ||||||||
Sbjct 274662 AACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGAC 274603
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
|| || | || || |||| ||| |||| || ||| ||||| ||| ||| |||
Sbjct 274602 TCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGT 274543
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911
|| || || | || | ||| || | |||| | || |||| || || ||
Sbjct 274542 GGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCTATATTGCCGGCACTAAC 274483
Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971
||| || | ||| | | || ||||| || || || ||| ||| || ||||| ||
Sbjct 274482 GGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTC 274423
Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028
|||| | ||| ||| ||| || |||| |||| |||||||| ||||||||
Sbjct 274422 GACCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCC 274363
Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088
||| || | || ||| | || |||| ||||| || | ||||||| || |||
Sbjct 274362 GATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCCGT 274303
Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148
|| || ||| ||||||||||||||| || |||||||||||||| || ||| ||| ||
Sbjct 274302 GACCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGAGAAGAACGGG 274243
Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAG 112208
| ||| ||||| | || || || || || || || |||| | || ||||||
Sbjct 274242 GACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGGAG 274183
Query 112209 TTTGAAGCCCTCTACACAAAGTACGAG--GAAG----AAAGTCGGGCGACTGCGACGGTG 112262
|| || ||| | ||| ||||||||| || | | |||| ||| || ||
Sbjct 274182 TTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCATGAAGG-C 274124
Query 112263 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322
|||| || | ||| | || || ||| || | || ||||||||||| | || |
Sbjct 274123 CCAGAAGC-----TCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCTTTC 274069
Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382
||||| ||||| || ||| |||| ||||| || || ||||| | || |||
Sbjct 274068 ATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATCCGC 274009
Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442
|| ||||||||||| || || ||| | || | | |||||| || || ||
Sbjct 274008 AGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTCGCGGTCTGC 273949
Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT--GATT 112500
||||| || || |||| | |||| | ||| || | | | || | | | | | || |
Sbjct 273948 AACCTGGCCTCGCTCGCCTTGCCCACCTTTGTTGA-CTACA-ACGAGGGCGTCTACGACT 273891
Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560
| || |||||||| || || | ||| ||||| |||||| | || ||
Sbjct 273890 TCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGAATCATCGACG 273831
Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620
|| ||||| ||| || ||||| || || ||| | ||||| || |||||||
Sbjct 273830 TCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGTCACCGCCCCATTGGTC 273771
Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGAC 112679
|||||||||| ||||| || |||| ||| | || || ||| | || || ||
Sbjct 273770 TCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTG-CGCATGCCCTTCGAGTCTCCT 273712
Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739
|| || || | || | || |||||||| || || ||||| || || |
Sbjct 273711 GAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTACCACGCTGCCCT---CACC 273655
Query 112740 AGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796
| |||| || |||| ||| || || || || | || | |||||||| || |
Sbjct 273654 ATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCCGTC 273595
Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGG 112856
|| || || | || || | || |||||| | | || || | || || ||||||
Sbjct 273594 TCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTGG 273535
Query 112857 GACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 112916
|||||| | ||||| | |||||| || | ||| | || ||| |||| | | || ||
Sbjct 273534 GACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCCC 273475
Query 112917 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 112976
||||| || || |||| | || |||||||| || || || |||||||| ||||||||
Sbjct 273474 ATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACACC 273415
Query 112977 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTC 113036
| |||||||| | | || | || || || ||||| | | |||||| |||
Sbjct 273414 TCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTTCCAGGTCGTCAACCCTTGGCTC 273355
Query 113037 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089
|| | ||||| || || ||| | |||||| | | |||||| | | |||
Sbjct 273354 TTGAAGGACCTTGTCGACATGGGTTTGTGGTCCGATGCCATGAAGAACCGCAT 273302
>seq2328
Length=411296
Score = 141 bits (156), Expect = 1e-28
Identities = 174/236 (74%), Gaps = 9/236 (4%)
Strand=Plus/Minus
Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 102155
|||||| |||||||| || || | ||||| || || |||||| |||||||| |
Sbjct 57377 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGC 57321
Query 102156 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 102215
|| ||||| ||||| || |||| ||| | || || || || |||||||||
Sbjct 57320 GACGAGAAGTCC---TCCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATC 57264
Query 102216 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 102275
|||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| |||
Sbjct 57263 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGT 57204
Query 102276 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|| ||||||||||||||| ||||||||||| ||||| |||||| || |||||
Sbjct 57203 CTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGC 57148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620719929125120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |