Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1484 257 2e-63 seq2654 107 2e-18 >seq1484 Length=366709 Score = 257 bits (284), Expect = 2e-63 Identities = 1121/1749 (64%), Gaps = 47/1749 (3%) Strand=Plus/Plus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 |||| || ||| || || ||||| ||||| || ||||| |||||| || | ||| Sbjct 273050 GCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGACCGAGCTTCCAGCCGGCGAAGTGC 273109 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || | || |||| | ||||| || ||| | ||| | |||||| ||||| Sbjct 273110 ATGCTGGTGATTTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGG 273169 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCC 109575 || ||||| |||||| || || ||||| | ||| | ||| || | |||||| Sbjct 273170 TCAATGAAGGCACCACGGTCGGCAGCCATCTGCACGACGGTACGCTGAGAG---ATTTCC 273226 Query 109576 CAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAG 109635 || ||||||||||||| ||||| ||| || |||| |||||| || || || Sbjct 273227 CAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTGGATCGA- 273285 Query 109636 CCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTG 109692 ||| || | |||| | | |||||| | | ||||| | ||| | | | | Sbjct 273286 --ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCA---TGTCG 273340 Query 109693 AGATCGTCAA-CAAGATGCTTG--TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGG 109749 | | ||| ||||| | | ||||| || || ||||||||||| ||||| Sbjct 273341 ACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGC 273400 Query 109750 AGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTG 109809 |||||||||| | |||||||| || || ||||| |||||||| | ||| || | ||| Sbjct 273401 TGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTG 273460 Query 109810 GAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGC 109869 ||| || |||||||| || | ||||||| ||| |||| ||| | | ||| | | || Sbjct 273461 CTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGC 273520 Query 109870 TCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCT 109929 || || |||||||| || | || | | | | || ||| |||||| || Sbjct 273521 TCCTTCAAAGCGTCCCAGTCCCAGAGATC-CGAG-----GGCTTGACATTCCACATGTCG 273574 Query 109930 GGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACC 109989 || || | |||| || | || ||||||| | | ||| ||| | ||||| || Sbjct 273575 TACTGGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCC 273634 Query 109990 TCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCA 110049 | ||||| || || || || || || || || |||||||| || | Sbjct 273635 TTGGCCAGCTGCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTG 273694 Query 110050 TTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA-ATAAACACATCCGC 110108 || | | ||||| ||| | | |||||||| | | || || | || |||| || Sbjct 273695 TTTAGGTCGCGAGCCTCAGGAGACTCGAAGGGCATGCG-CAGAGCCAGGAAGGCATCAGC 273753 Query 110109 TAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTC 110168 |||||||| |||||||||||||||||||| || |||||| | ||||| | Sbjct 273754 AAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCTG 273813 Query 110169 TACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGAT 110228 || ||||| |||| |||||||| | || || || ||| || |||| Sbjct 273814 AACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGAC 273873 Query 110229 TTCATGGAGTTTGTCGTAATCGAA--CGTTTTCGTCTCCTTATTGACATATTTGGGGAGA 110286 || ||||| || | | | ||| | || |||| | | ||| | |||| | Sbjct 273874 CTCGTGGAGCTTCTGGAAGTCGTAGACGCCCTCGTTG--TAGTCAACAAAGGTGGGCAAG 273931 Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346 || | || || || ||||| || | ||| || || ||| || | || ||| Sbjct 273932 GCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCC 273991 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406 || || | |||||| || ||| || | ||||||||| || ||| |||| Sbjct 273992 GTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 274051 Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466 |||||||| ||||||||| | ||| | ||||| || ||||| | || ||| ||||| | | Sbjct 274052 GCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATAC 274111 Query 110467 CATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTG 110523 || | | || | ||| | || |||| | | || || | ||||||||| | Sbjct 274112 CAGAGCTTCTG-GGCCTTCATGGTCTTGCGACC-CTTGCCCATC-TGCTCGTACTTCTCG 274168 Query 110524 TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAG 110583 |||||| |||| || |||| ||||| || | || || || || ||| || Sbjct 274169 TACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCAC 274228 Query 110584 AAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATC 110643 | ||| | ||| | || || ||| |||||||||||||| ||||| |||||||| | Sbjct 274229 ATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGA 274288 Query 110644 GCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAA 110703 || ||||||||||||| |||| |||| || | || ||||| ||| || ||||| Sbjct 274289 GCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAG 274348 Query 110704 AAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---A 110760 ||||| | || ||| | |||||| || || || |||| |||| | ||| || Sbjct 274349 AAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTG 274408 Query 110761 CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATT 110820 || |||||| || ||||| || ||| |||||||| | |||||| || | | Sbjct 274409 TTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACA 274468 Query 110821 CCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATA 110880 || | || ||| || || || ||| ||| ||||||| ||| || | Sbjct 274469 CCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACG 274528 Query 110881 TGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGTACCAT 110938 | | |||||| ||||| ||| ||| || | | ||| | ||| |||| || | | Sbjct 274529 TTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGTGTCGT 274586 Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998 | ||||| ||||| || || |||| || | | || |||||||| |||| ||| | Sbjct 274587 AGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCT 274646 Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACAT 111056 |||| || || || ||||||||||| || | || || ||| ||| ||| ||||| Sbjct 274647 GAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGA--AGAATTTGCTCGACAT 274704 Query 111057 CTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCG 111116 | |||||| || |||| || || || | ||| ||||||| ||| || || Sbjct 274705 CAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACG 274764 Query 111117 CATGAACAT 111125 ||||| ||| Sbjct 274765 CATGATCAT 274773 >seq2654 Length=188044 Score = 107 bits (118), Expect = 2e-18 Identities = 330/501 (66%), Gaps = 17/501 (3%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || || | ||||| | || || || ||| | | ||| || | ||| Sbjct 60824 TCGAAACGGCCGGGACGCATCAGAGCCTTGTCGAGGATGTCGGCTCTGTTGGTGCCCGCA 60883 Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | || || | || | ||| | ||| |||||||||||| || ||||| | |||||| Sbjct 60884 AGCACAACCA--CCTG-CTCCTGGGTGTTGAAACCGTCCATCTCGGTGAGGATCTGGTTC 60940 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC---ACCTGCCGAACGCTTCTTACCG 11679 | || || ||||| |||||| | ||| | ||| || | | | ||| Sbjct 60941 AGGGTAGCCTCGCGCTCGTCGTTGCCGCCCATGCGGTTACCCTCCTGTCTCGACCGACCA 61000 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 | || || ||||| || ||||| | || || || ||| || ||| | |||| Sbjct 61001 ATGGCATCGATCTCGTCAATGAAGATAATGCAAGGGGCGTTCTTCCGCGCCGTTGCGAAC 61060 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAG 11797 || ||||| || | | |||||||| ||||||||||| ||||| | | | || | Sbjct 61061 AGGTCACGGACTCTGGAAGGACCAACACCGACGAACATCTCGACGAACTCGGAACCGCTG 61120 Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 | | ||||| |||||| || ||||| || || |||| || || || ||||||| Sbjct 61121 A-CGCTGAA-GAAGGGCACGCCGGACTCGCCGGCAGTGGCCTTGGCAAGCAGCGTCTTAC 61178 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCAAA 11915 | || || || | ||||| || | || || ||||||||||||||||| || || Sbjct 61179 CGGTTCCGGGAGGTCCAGCCAGGATAGCACCGCGGGGGATCTTGGCACCTAACCTC--TC 61236 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTC 11975 | ||||||| || |||| | |||| || | |||| || ||| |||||| ||| Sbjct 61237 GAAGCGCTCGGGGGTCTTCAAGAAGCTGACGAACTCCATAATCTCCGTCTTGGCCTCGTC 61296 Query 11976 GATACCCTCAACATCGGTGAA 11996 || || |||| ||| |||| Sbjct 61297 CATGCCGGCAACGTCGCTGAA 61317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588954679068800