Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1484 183 4e-41 seq2328 109 6e-19 >seq1484 Length=366709 Score = 183 bits (202), Expect = 4e-41 Identities = 1042/1644 (63%), Gaps = 55/1644 (3%) Strand=Plus/Plus Query 105697 CTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTC 105756 ||||||||||||| |||||| | || ||||| | | ||| | |||||| Sbjct 273166 CTGGTCAATGAAGGCACCACGGTCGGCAGCCATCTGCACGACGGTACGCTGAGAGATTTC 273225 Query 105757 CCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGA 105816 ||| || || ||| || ||||| ||| ||||| | | ||| || || || || Sbjct 273226 CCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTGGATCGA 273285 Query 105817 ACC---CCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTT 105873 ||| | | || ||| || | | |||||| | | |||||| | ||| || | Sbjct 273286 ACCGTTCTCGGCAATGA---TGCGGTTCTTCATGGCATCGGACCACAAACCCATGTCGAC 273342 Query 105874 GAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAG 105933 || || || | ||| |||||| | | ||||| || || || | || | | Sbjct 273343 AAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTG 273402 Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 |||||||| | |||||||| |||||||| || || || |||||||| || | |||| Sbjct 273403 GTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCT 273462 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 || || ||||| || || | | |||| ||| || | ||| | | |||||| | || Sbjct 273463 AGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTC 273522 Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATATCAAATTGA 106111 ||| | | | |||||||| || || | || || || |||| |||| || | || Sbjct 273523 CTTCAAAGCGTCCCAGTCCCAGA-GATCCGAGGGCTTGACATTCC-ACATGTCGTACTGG 273580 Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171 || | || || || ||| |||||||| | |||| |||| || | | | ||| Sbjct 273581 AGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCC 273640 Query 106172 AATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230 | | ||| | | |||| ||||| || ||||| |||||||| || | Sbjct 273641 AGCTGCACCGACATGGTG-AGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAG 273699 Query 106231 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 106285 || || ||| || || || |||| || | || || |||| || Sbjct 273700 GTCGCGAGCCTCAGGAGACTCGAAGGGCATGCGCAGAGCCAGGAAGG-----CATCAGCA 273754 Query 106286 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 106345 ||||| || ||||| | |||||| || | ||| ||||| || || || || || | Sbjct 273755 AGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCTGA 273814 Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 106405 || || || || ||| |||| || ||| || || | ||||| || |||| Sbjct 273815 ACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACC 273874 Query 106406 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGAAGG 106462 || || || || | | || | || ||| | | | ||| | | || | | Sbjct 273875 TCGTGGAGCTTCTGGAAGTCGTAGACGCC---CTCGTTGTAGTCAACAAAGGTGGGCAAG 273931 Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 |||| || |||| ||||| || || |||||| | |||||| | || || Sbjct 273932 GCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCC 273991 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || || | |||||| || || || || | ||||| ||||| ||||| |||| Sbjct 273992 GTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 274051 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 |||||||||||||||||| | || | || ||||| ||||| | || ||| || || | | Sbjct 274052 GCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATAC 274111 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTACTTTGT 106698 || | | || | | || |||| ||| ||| | ||| | ||||||||| Sbjct 274112 CAGAGCTTCTGGGCCTTC----ATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTC 274167 Query 106699 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 106758 ||| | ||| || |||||||| || ||||| || || || || || || || Sbjct 274168 GTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCA 274227 Query 106759 GAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 106818 | |||| ||| | || || ||| |||| ||||||||| ||||| |||||||| || Sbjct 274228 CATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAG 274287 Query 106819 GG--ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 106876 | | |||||| || | ||| |||| || | || ||||| || | || Sbjct 274288 AGCGAGGAAAAGG--TCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCC 274345 Query 106877 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT----T 106932 | ||| || | || ||| |||||||| |||||||| |||| |||| || ||| | Sbjct 274346 AAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGT 274405 Query 106933 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992 | | ||| | | || | || ||||| || ||| ||| || || || ||||| || | Sbjct 274406 TTGTTGCC-ACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGAC 274464 Query 106993 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 107052 | ||| | || ||| || || || |||| || |||| | | ||| Sbjct 274465 GACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATG 274524 Query 107053 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTT 107110 | || | ||||| || || ||| ||| ||||| | ||||| | || | || || Sbjct 274525 AACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGTG 274582 Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170 | |||||||| | || ||||||||||| || ||| ||||||||| ||||| ||| Sbjct 274583 TCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG- 274641 Query 107171 GGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGG 107227 || || || |||||||| |||||||| || || | ||||| |||| | | || Sbjct 274642 GGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCT--C 274699 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| || ||| || || | ||| |||| ||| || || ||| || | ||| Sbjct 274700 GACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCG 274759 Query 107288 ACACGCATAAACATGTATTGGGGT 107311 |||||||| | ||||| |||||| Sbjct 274760 ACACGCATGATCATGTGCTGGGGT 274783 >seq2328 Length=411296 Score = 109 bits (120), Expect = 6e-19 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||||||||||||||| || || || || || || |||||| || || Sbjct 57147 GGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 57206 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| ||||| |||||||| | ||| | || | | ||| | ||| ||||||||| Sbjct 57207 AGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGAT 57266 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC--- 117449 |||||| || || || |||| ||||||| |||||||||| ||||| ||| Sbjct 57267 ACCCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAG---GACTTCTCGTCGCT 57323 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTT 117479 | ||| |||| ||||| | |||||||| Sbjct 57324 GATCCACTTCAGAGCCCAGTCGGCCTTCTT 57353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589959442695040