Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 183 4e-41
seq2328 109 6e-19
>seq1484
Length=366709
Score = 183 bits (202), Expect = 4e-41
Identities = 1042/1644 (63%), Gaps = 55/1644 (3%)
Strand=Plus/Plus
Query 105697 CTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTC 105756
||||||||||||| |||||| | || ||||| | | ||| | ||||||
Sbjct 273166 CTGGTCAATGAAGGCACCACGGTCGGCAGCCATCTGCACGACGGTACGCTGAGAGATTTC 273225
Query 105757 CCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGA 105816
||| || || ||| || ||||| ||| ||||| | | ||| || || || ||
Sbjct 273226 CCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTGGATCGA 273285
Query 105817 ACC---CCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTT 105873
||| | | || ||| || | | |||||| | | |||||| | ||| || |
Sbjct 273286 ACCGTTCTCGGCAATGA---TGCGGTTCTTCATGGCATCGGACCACAAACCCATGTCGAC 273342
Query 105874 GAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAG 105933
|| || || | ||| |||||| | | ||||| || || || | || | |
Sbjct 273343 AAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTG 273402
Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993
|||||||| | |||||||| |||||||| || || || |||||||| || | ||||
Sbjct 273403 GTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCT 273462
Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053
|| || ||||| || || | | |||| ||| || | ||| | | |||||| | ||
Sbjct 273463 AGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTC 273522
Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATATCAAATTGA 106111
||| | | | |||||||| || || | || || || |||| |||| || | ||
Sbjct 273523 CTTCAAAGCGTCCCAGTCCCAGA-GATCCGAGGGCTTGACATTCC-ACATGTCGTACTGG 273580
Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171
|| | || || || ||| |||||||| | |||| |||| || | | | |||
Sbjct 273581 AGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCC 273640
Query 106172 AATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230
| | ||| | | |||| ||||| || ||||| |||||||| || |
Sbjct 273641 AGCTGCACCGACATGGTG-AGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAG 273699
Query 106231 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 106285
|| || ||| || || || |||| || | || || |||| ||
Sbjct 273700 GTCGCGAGCCTCAGGAGACTCGAAGGGCATGCGCAGAGCCAGGAAGG-----CATCAGCA 273754
Query 106286 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 106345
||||| || ||||| | |||||| || | ||| ||||| || || || || || |
Sbjct 273755 AGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCTGA 273814
Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 106405
|| || || || ||| |||| || ||| || || | ||||| || ||||
Sbjct 273815 ACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACC 273874
Query 106406 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGAAGG 106462
|| || || || | | || | || ||| | | | ||| | | || | |
Sbjct 273875 TCGTGGAGCTTCTGGAAGTCGTAGACGCC---CTCGTTGTAGTCAACAAAGGTGGGCAAG 273931
Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522
|||| || |||| ||||| || || |||||| | |||||| | || ||
Sbjct 273932 GCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCC 273991
Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582
|| || | |||||| || || || || | ||||| ||||| ||||| ||||
Sbjct 273992 GTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 274051
Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642
|||||||||||||||||| | || | || ||||| ||||| | || ||| || || | |
Sbjct 274052 GCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATAC 274111
Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTACTTTGT 106698
|| | | || | | || |||| ||| ||| | ||| | |||||||||
Sbjct 274112 CAGAGCTTCTGGGCCTTC----ATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTC 274167
Query 106699 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 106758
||| | ||| || |||||||| || ||||| || || || || || || ||
Sbjct 274168 GTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCA 274227
Query 106759 GAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 106818
| |||| ||| | || || ||| |||| ||||||||| ||||| |||||||| ||
Sbjct 274228 CATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAG 274287
Query 106819 GG--ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 106876
| | |||||| || | ||| |||| || | || ||||| || | ||
Sbjct 274288 AGCGAGGAAAAGG--TCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCC 274345
Query 106877 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT----T 106932
| ||| || | || ||| |||||||| |||||||| |||| |||| || ||| |
Sbjct 274346 AAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGT 274405
Query 106933 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992
| | ||| | | || | || ||||| || ||| ||| || || || ||||| || |
Sbjct 274406 TTGTTGCC-ACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGAC 274464
Query 106993 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 107052
| ||| | || ||| || || || |||| || |||| | | |||
Sbjct 274465 GACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATG 274524
Query 107053 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTT 107110
| || | ||||| || || ||| ||| ||||| | ||||| | || | || ||
Sbjct 274525 AACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGTG 274582
Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170
| |||||||| | || ||||||||||| || ||| ||||||||| ||||| |||
Sbjct 274583 TCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG- 274641
Query 107171 GGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGG 107227
|| || || |||||||| |||||||| || || | ||||| |||| | | ||
Sbjct 274642 GGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCT--C 274699
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| || ||| || || | ||| |||| ||| || || ||| || | |||
Sbjct 274700 GACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCG 274759
Query 107288 ACACGCATAAACATGTATTGGGGT 107311
|||||||| | ||||| ||||||
Sbjct 274760 ACACGCATGATCATGTGCTGGGGT 274783
>seq2328
Length=411296
Score = 109 bits (120), Expect = 6e-19
Identities = 151/210 (72%), Gaps = 6/210 (3%)
Strand=Plus/Plus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || ||||||||||||||| || || || || || || |||||| || ||
Sbjct 57147 GGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 57206
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392
||||| ||||| |||||||| | ||| | || | | ||| | ||| |||||||||
Sbjct 57207 AGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGAT 57266
Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC--- 117449
|||||| || || || |||| ||||||| |||||||||| ||||| |||
Sbjct 57267 ACCCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAG---GACTTCTCGTCGCT 57323
Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTT 117479
| ||| |||| ||||| | ||||||||
Sbjct 57324 GATCCACTTCAGAGCCCAGTCGGCCTTCTT 57353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589959442695040
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