Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq1396 91.5 1e-13
>seq1396
Length=452294
Score = 91.5 bits (100), Expect = 1e-13
Identities = 418/664 (63%), Gaps = 68/664 (10%)
Strand=Plus/Plus
Query 29775 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGC 29834
||||||||| | ||| | ||| ||| |||| || ||||| || |||||| || ||
Sbjct 168977 TCTGGGCTCACGCTCCAACTGCACCTTGAGCGCATCAACGTGGTCGGCGTAGACATGTGC 169036
Query 29835 GTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT 29893
|| |||| | ||| | || || || || | || || || | || |||||||
Sbjct 169037 ATCGCCCATGACGTGCGTCAGGCTG-CCAGGGACGAGGTCGCATGCGCGGGCAATCATGT 169095
Query 29894 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 29953
||| || || | |||||| |||||||| ||||| || || || |||||||| | ||||
Sbjct 169096 GCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCAAGGCCCATGTCACAGGACC 169155
Query 29954 TCTGGTAGAGCTGACACGAGAG---------------CTCTCCGTC-------------- 29984
|||||| ||||| || || |||||||||
Sbjct 169156 GCTGGTACAGCTGGCAGCGCAGGTGGCCCTTTGGTTTCTCTCCGTCAGCGGGTGCAATGC 169215
Query 29985 --GCTC-----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCA 30028
|| | ||||| || || | ||||| ||||| || || || ||||
Sbjct 169216 GGGCCCGCGGGTAGGAGACGTAGAATTGCGCAAACATG---TGGCAAGGCGGGAGGGCCA 169272
Query 30029 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088
| | ||| ||||||||| |||| | | |||||| | ||| | |||||
Sbjct 169273 TCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGAAGGATGCGGCGGTCGTACGGGTTCG 169332
Query 30089 TCCTGAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 30142
|| | | || | || ||||| |||||||| || ||| |||| ||| |
Sbjct 169333 TCTTCAGCTTGTGGATGACCTCGGCG------AGCTGATCGACGCCCTGGCCCGTGTAAT 169386
Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202
| | | | ||| ||||| || || || || | ||| ||||| ||||| || || |
Sbjct 169387 CCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGC 169446
Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262
| ||||| || |||| | ||| || ||| |||| | || || | || ||||
Sbjct 169447 CGAGGTCGCCGACTTCGCGATGCGAGAGGCCAACGCTGTCAAGGAACTCACGTGAGCCGT 169506
Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTG 30321
|| ||||||||||||| || || |||| || | |||| |||| ||||| |
Sbjct 169507 TGCCGTCCCAGATCTTAACGCCTGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-G 169565
Query 30322 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGA 30379
||||||||||||||||| | | |||||| | || ||||| | ||| || || ||||
Sbjct 169566 ACGAACCACAGCAGCTCGGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTGGTAAGGA 169623
Query 30380 GGGG 30383
||||
Sbjct 169624 GGGG 169627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408603177841808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |