Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1396 91.5 1e-13 >seq1396 Length=452294 Score = 91.5 bits (100), Expect = 1e-13 Identities = 418/664 (63%), Gaps = 68/664 (10%) Strand=Plus/Plus Query 29775 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGC 29834 ||||||||| | ||| | ||| ||| |||| || ||||| || |||||| || || Sbjct 168977 TCTGGGCTCACGCTCCAACTGCACCTTGAGCGCATCAACGTGGTCGGCGTAGACATGTGC 169036 Query 29835 GTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT 29893 || |||| | ||| | || || || || | || || || | || ||||||| Sbjct 169037 ATCGCCCATGACGTGCGTCAGGCTG-CCAGGGACGAGGTCGCATGCGCGGGCAATCATGT 169095 Query 29894 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 29953 ||| || || | |||||| |||||||| ||||| || || || |||||||| | |||| Sbjct 169096 GCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCAAGGCCCATGTCACAGGACC 169155 Query 29954 TCTGGTAGAGCTGACACGAGAG---------------CTCTCCGTC-------------- 29984 |||||| ||||| || || ||||||||| Sbjct 169156 GCTGGTACAGCTGGCAGCGCAGGTGGCCCTTTGGTTTCTCTCCGTCAGCGGGTGCAATGC 169215 Query 29985 --GCTC-----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCA 30028 || | ||||| || || | ||||| ||||| || || || |||| Sbjct 169216 GGGCCCGCGGGTAGGAGACGTAGAATTGCGCAAACATG---TGGCAAGGCGGGAGGGCCA 169272 Query 30029 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088 | | ||| ||||||||| |||| | | |||||| | ||| | ||||| Sbjct 169273 TCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGAAGGATGCGGCGGTCGTACGGGTTCG 169332 Query 30089 TCCTGAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 30142 || | | || | || ||||| |||||||| || ||| |||| ||| | Sbjct 169333 TCTTCAGCTTGTGGATGACCTCGGCG------AGCTGATCGACGCCCTGGCCCGTGTAAT 169386 Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202 | | | | ||| ||||| || || || || | ||| ||||| ||||| || || | Sbjct 169387 CCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGC 169446 Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262 | ||||| || |||| | ||| || ||| |||| | || || | || |||| Sbjct 169447 CGAGGTCGCCGACTTCGCGATGCGAGAGGCCAACGCTGTCAAGGAACTCACGTGAGCCGT 169506 Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTG 30321 || ||||||||||||| || || |||| || | |||| |||| ||||| | Sbjct 169507 TGCCGTCCCAGATCTTAACGCCTGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-G 169565 Query 30322 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGA 30379 ||||||||||||||||| | | |||||| | || ||||| | ||| || || |||| Sbjct 169566 ACGAACCACAGCAGCTCGGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTGGTAAGGA 169623 Query 30380 GGGG 30383 |||| Sbjct 169624 GGGG 169627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408603177841808