Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1484 408 8e-109 seq2328 176 8e-39 >seq1484 Length=366709 Score = 408 bits (452), Expect = 8e-109 Identities = 1065/1600 (67%), Gaps = 82/1600 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| ||||| || ||||||||||| ||||| Sbjct 273023 ACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTC 273082 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| ||||||| | |||||| |||| ||| ||| || | | Sbjct 273083 AGACCGAGCTT---CCAGCCGGCGAAGTGCAT-GCTGGTGATTTTGCCCA------TGGT 273132 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 | |||| | || || || | ||| || ||||| |||||| ||||| | | Sbjct 273133 CGGGTCCT--TCATG-------TGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACC 273183 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | | || | ||| |||| ||||| || |||||| | | Sbjct 273184 ACGGTCGGCAGCCATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAG 273243 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCA- 212847 | |||| || |||| | |||||||||||| | || || || | | | || Sbjct 273244 GGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTGGATCGAACC---GT-TCTCGGCAA 273299 Query 212848 -GCTGCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGT 212904 | ||| | |||| | ||| ||| | ||| || | ||| ||| | || Sbjct 273300 TGATGCGGTTCTTCATGGCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCC 273359 Query 212905 GAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGT 212964 ||||||||| | |||||| ||||| | || || | | |||||| | ||| || |||| Sbjct 273360 AAGGGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGT 273419 Query 212965 AGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAG 213024 ||||||| | || ||||||||| |||| ||||| | ||||| || || |||||||| | Sbjct 273420 AGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCG 273479 Query 213025 CCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC--CGAAGCTCTGCCCA 213082 | || || ||| ||| | || ||||||| ||| | | | |||| |||| Sbjct 273480 CGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGT--CCCA 273537 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| || ||| | ||| || ||||||||||| |||| | |||||| Sbjct 273538 GTCCCAG---------AGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCC 273588 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 | |||||| |||| ||| | ||||||||| | |||||||||||||| ||| Sbjct 273589 CTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCA 273647 Query 213203 G-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261 ||| |||||||||| ||||||||| ||||| |||| | |||| || | | Sbjct 273648 CCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAG 273707 Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321 |||| || ||| ||||||||| || |||| ||||||| || |||||||| | Sbjct 273708 CCTCAGGAGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACAC 273767 Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAG 213380 ||| || ||||| | ||| | || ||| ||| |||| ||||| | ||||| | Sbjct 273768 CGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGG 273826 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||| ||||||||| |||| ||||||||| | || | |||||| | | || | | Sbjct 273827 TTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTC 273886 Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGC---ACAAACTCAGGCAGGGCGATGCTGGCC 213497 | | | | | ||| ||| ||| | ||||| |||| ||||| |||| Sbjct 273887 TGGAAGTCGTAGACG---CCCTCGTTGTAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCC 273943 Query 213498 AGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTG 213557 |||||||| || || ||||| | || | |||||| |||||||| ||||| |||||| Sbjct 273944 AGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTG 274003 Query 213558 CTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAG 213617 || ||||||||||| ||||||| ||||| ||| |||||| | |||||||||| Sbjct 274004 GAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAG 274063 Query 213618 AGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACC 213675 |||||| | ||| || ||||| ||||| | | || || ||| |||||| | | Sbjct 274064 AGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGAT--GGCATACCAGAGCTTCT 274121 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735 |||||| || | || | | | | | |||||||| ||||| | | | Sbjct 274122 GGGCCTT---CATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCT 274178 Query 213736 TGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCC 213795 ||| || | ||| || | |||| || || || ||| |||||||| ||| Sbjct 274179 CGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCC 274238 Query 213796 AGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854 |||||||| || ||||| || |||| |||||| ||||| || | ||| || ||| ||| Sbjct 274239 AGTCCCCGTTCTTCTCT-ACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAA 274297 Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 ||||| | || | ||| ||| || ||| ||||||||||| | ||||| ||| Sbjct 274298 AGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAG 274357 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCC 213971 | || |||||||| ||||| | ||||||||| || || ||||| | | ||||| ||| Sbjct 274358 ACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCC 274417 Query 213972 TGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 ||||| | | | || | || ||||||||| || || | ||| || | ||||| Sbjct 274418 TGGTCGA----CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTT 274473 Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA--- 214084 || ||||| || || || ||||| ||||||| ||| | || ||| ||| | Sbjct 274474 CGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCAC---GGATGC-GATGAACGT 274529 Query 214085 -GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 ||| || ||||||||||| |||||||||||||||||| Sbjct 274530 TGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 274569 >seq2328 Length=411296 Score = 176 bits (194), Expect = 8e-39 Identities = 353/517 (68%), Gaps = 11/517 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | |||||||||||||| ||||| || ||| ||||||||||| Sbjct 56856 CTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTC 56915 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||| ||| ||| || |||| | || || ||| ||||| ||| | ||| | Sbjct 56916 CATAAAGTCGAACGGATTGGAAGACTTGTAGACCT-TGTCATTGCCAAGAGCAACCAAGA 56974 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || |||||| |||| ||||| | ||| ||| || ||||||||| | || | Sbjct 56975 GACGGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAG 57034 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||| ||||| || || ||||||| ||| |||| || || || | | ||| | Sbjct 57035 CGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGACAATAATGT 57094 Query 48078 GCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || || | || ||| || | || ||| ||||| | ||||| | ||||| Sbjct 57095 CCTCAATGACCTGCTTGCTGGGGCGGTTCTTG---AGGTGAGAG---TAGAGGAGGCAGG 57148 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| |||| | || || || || ||||||| ||||||||||| ||||||| Sbjct 57149 CAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAG 57208 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || ||||||||||| || | ||||| | || ||||||||| | Sbjct 57209 GCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATAC 57268 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || ||||| || ||| | || |||| || | |||| ||| ||||| Sbjct 57269 CCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAGGACTTCTCGTCGCTGATCC 57328 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 | || |||||||| |||||||| |||||| || Sbjct 57329 ACTTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 57365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931499078512640