Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1484 329 6e-85 seq2328 156 8e-33 >seq1484 Length=366709 Score = 329 bits (364), Expect = 6e-85 Identities = 888/1332 (67%), Gaps = 51/1332 (4%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAA-GACTGCGTCAGGGC 221424 || ||||||| || |||||| || | | | |||| | ||| ||| || ||||| Sbjct 273605 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGC 273663 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGA 221483 ||||||||||||||||||||||||| ||||||| || || | ||||| ||||| || Sbjct 273664 AGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGG-TCGCGAGCCTCAGGAGACTCGA 273722 Query 221484 AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 ||||||| ||||| | | ||| | || || || ||||| || |||| ||| ||||| | Sbjct 273723 AGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGC 273782 Query 221544 TGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601 ||| | | ||||| | ||| | || ||| || || || |||||||||||| | Sbjct 273783 GGTGACGCATGTTGCTGTTGCGAGC-CTCCTGA-ACAGGGTAGTGGTTGACGTCGAT--G 273838 Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 ||| | |||||| || ||| ||| |||| ||| | || ||| | || | Sbjct 273839 ATTCT----GTTCAGGTTGCGGAC---AACAACCTGGGTGACCTCGTGGAGCTT---CTG 273888 Query 221662 CAACTCGC---CGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 || ||| |||| |||| | | || ||||| | | | ||| | |||||| Sbjct 273889 GAAGTCGTAGACGCCCTCGTTGTAG---TCAACAAAGGTGGGCAAGGCGAGCGAGGCCAG 273945 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||| || || || ||||| || | |||| |||||||| || ||||||||| Sbjct 273946 GTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTGGA 274005 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 || |||||| || |||| || || || |||||| ||||| || ||||||||||| Sbjct 274006 GCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAG 274065 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGC 221898 ||| || || ||||||||| ||| ||| | || || | |||||| | ||||| Sbjct 274066 CATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCT-TCTGGG 274124 Query 221899 GCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATAC--CCGGTATAGAGCATG 221953 || | | ||||| ||||| | ||| || ||| | ||| | || | Sbjct 274125 CCTT--CATGGTCTTGCG---ACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCT- 274178 Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 | |||| || ||||| ||| ||||||| || ||| | ||| ||||| ||| || Sbjct 274179 -CGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTC 274237 Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073 |||| | ||| | | ||||||| |||||||||||| || ||||| || || | || Sbjct 274238 CAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAA 274297 Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133 || || | || || ||||||| ||||| ||| || | ||||||||| || || || Sbjct 274298 AGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAG 274357 Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193 | || |||||||| ||||| || |||| ||| | ||| || || || |||||||||||| Sbjct 274358 ACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCC 274417 Query 222194 TGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252 || || | | | ||| | |||||||| || || | || || | ||||| || Sbjct 274418 TGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGA 274476 Query 222253 TCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG---GCAGACAT 222309 |||||| ||||| ||| || | ||| ||| | | | | || | || | Sbjct 274477 GGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGA-TGAACGTTGAGA- 274534 Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 || || |||||||| || |||||||||||||| ||||||| ||||| ||| || Sbjct 274535 -CCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATACC 274593 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 ||| |||||||||||||| | || | || || ||||| |||| ||| | | | || Sbjct 274594 CTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGT 274653 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTA 222489 || ||||| || || |||||| ||||| || ||| | || |||||||| | ||| Sbjct 274654 ACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTA 274713 Query 222490 CGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACAT 222549 || || | ||| | | | || ||| || || | |||| | |||| ||| Sbjct 274714 GGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCAT 274773 Query 222550 GTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGA 222607 || |||||| ||||| || || | |||| ||| ||||| ||| | |||| Sbjct 274774 GTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT--TGAGGAGGTATGATCTCTCCAAG 274831 Query 222608 GTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGC 222667 |||||||| || || || | | || ||||| | | | | || | ||| | ||| ||| Sbjct 274832 GTCTTGAAGCCGAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTCAAGC 274891 Query 222668 TCCGACTTGTGC 222679 || ||||||| Sbjct 274892 TCTTCCTTGTGC 274903 >seq2328 Length=411296 Score = 156 bits (172), Expect = 8e-33 Identities = 345/519 (66%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||| | |||||| ||||| |||||||||||| | | ||| | | Sbjct 57365 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAAGTCCTCC 57306 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | | |||| || || ||||| || || || ||||| ||||| ||||||||| | || Sbjct 57305 TTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTC 57246 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||||||||||||||| || || ||||| || ||| ||| ||||||||| Sbjct 57245 GCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAG 57186 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 |||||| | || ||||||||||||| || ||||||||||| |||||| | ||| Sbjct 57185 CTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTC---TCAC 57129 Query 26050 TTGCTCCACAA--ACCTTCTCAAG-AG---ACCGTCTACAGTATCATCAAAGAGGCTGTG 26103 ||| | || || |||| || | | ||| ||| || || ||||| Sbjct 57128 ---CTCAAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATTATTGTC---GATGCTGTC 57075 Query 26104 GAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAAC 26163 |||||||| ||||||| | | ||||||||| | Sbjct 57074 AAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCC 57015 Query 26164 AGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACT 26222 | || |||| || |||||||||| || || |||| ||| | || | ||| | | Sbjct 57014 AACCTGATGAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAAT 56955 Query 26223 CGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 | || |||||| | | || ||||||||||||||||| ||||| || ||| || Sbjct 56954 -GACAAGGTCTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCGG 56896 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||||||||||| ||| | || | |||||| || Sbjct 56895 CAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCA 56857 Score = 96.9 bits (106), Expect = 6e-15 Identities = 165/236 (70%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | ||| |||||||||||| |||||||||||| Sbjct 57762 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 57703 Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| | | || ||| || | || || | Sbjct 57702 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTCG 57643 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || ||||| || || |||||||| || |||| | Sbjct 57642 CACATCCTCGCCTTCTTCGCTGCTTCCGATGGCATTGTCAACGAGAACTTGGTCGAGCGC 57583 Query 25654 TTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || ||| ||| |||||| || ||||| || ||||| || Sbjct 57582 TTCAGCGGCGAGGTCCAG---GTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 57530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928811175818240