Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1484 170 2e-37 seq2328 109 7e-19 >seq1484 Length=366709 Score = 170 bits (188), Expect = 2e-37 Identities = 913/1433 (64%), Gaps = 57/1433 (4%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| | || ||| || || ||| |||| ||| Sbjct 274782 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 274723 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 75329 | || || ||| || |||||| || | | |||| ||||| | || || |||| Sbjct 274722 ATCGAAACCTACAACCTGATGTCG--AGCAAATTCTTCACCCACGCTTCTCCCACACTCT 274665 Query 75330 TCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 |||| |||||||| || || || ||| ||||| ||||||||| ||| || |||||| Sbjct 274664 TCAACGCTGGTACCCCTCAGGCC-CAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAG 274606 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGG 75446 ||||| || | |||||||| | || || | || | ||||| | ||||| ||| || Sbjct 274605 GACTCTATTGAGGGTATCTACGACACCCTCA-AGACT-TGCGCCATGATCTCCAAGATGG 274548 Query 75447 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 75506 | || || ||||| | || | ||| | | |||| || |||| || | Sbjct 274547 CCGGTGGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCTATATTGCCGGCA 274488 Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 | || ||| || | ||| | | || ||||| || || || ||| ||| || |||| Sbjct 274487 CTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGCTCGCT 274428 Query 75567 ATGTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 | || | | || | ||| ||| ||| | |||| ||||| | || || ||| Sbjct 274427 ACGTCGA-CCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCCTTGG 274369 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || |||||| || | || ||| | || | || ||||| || | || |||| ||| Sbjct 274368 CACGCCGATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGT 274309 Query 75683 TGTAGAGATCTCTTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | || |||||| | | || |||||||| ||||| ||||||||| |||| ||| Sbjct 274308 GCCCGTGA--CCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGAGA 274251 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800 || || | ||| |||| | || || || || || || || ||||| | Sbjct 274250 AGAACGGGGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACG 274191 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA--AGAGG----AGGGTAGAGCCAATG 75854 | |||||||| || ||| | ||| ||||| || ||| | ||||| | ||| Sbjct 274190 GCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCG---CAA-- 274136 Query 75855 CGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 ||| | || | | || | | ||| | || || ||| | | ||||| |||||||| Sbjct 274135 -GACCAT-GAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGC 274078 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 | || | ||||| ||||||||||| ||| ||||| ||||| ||||| | || Sbjct 274077 AACCCTTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGC 274018 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || ||| ||||| || || |||||||| || | |||||| | |||||| Sbjct 274017 ACCATCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTC 273958 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT---CAATGAAGAGACTCGC 76090 || || ||||| |||| || ||||| | || | | ||| | | | ||| || Sbjct 273957 GCGGTCTGCAACCTGGCCTCGCTCGCCTTGCCCACCTTTGTTGACTACAACGAG---GGC 273901 Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150 | || | | || || || || |||| || ||||| | || || ||| || Sbjct 273900 GTCTACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGA 273841 Query 76151 GTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210 |||| ||| || || || ||| || || || || || ||||| ||| | Sbjct 273840 ATCATCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGTCACCGC 273781 Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA--- 76267 || |||||| | ||||| || ||||| || |||| || || | || |||| Sbjct 273780 CCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATG-----CCTTCCTGGCTCTGCGCATGC 273726 Query 76268 --TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325 || || || ||| || || | || |||||||| ||||| || |||| Sbjct 273725 CCTTCGAGTCTCCTGAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTACCACG 273666 Query 76326 CATCCCTGGAGGCGAGT-TGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 | |||| | || ||| | |||| | | | || |||| |||| | || Sbjct 273665 CTGCCCT--CACCATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGA 273608 Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC--AAG 76441 |||||| |||| || || || | || |||| || |||| |||| || || || | Sbjct 273607 GGGTTCCCCCGTCTCTCAGGGCATCCTCCAGTACGACATGT-GGAATGTCAAGCCCTCGG 273549 Query 76442 CTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 || || |||||||| | | | ||||| | |||||| || | ||| | || ||| | Sbjct 273548 ATC-TCTGGGACTGGGACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCT 273490 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 ||| | | || || ||||| || || |||| | || |||||||| || || || ||| Sbjct 273489 CTTCTCGTCGCGCCCATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGC 273430 Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTT 76614 ||||| || ||||| | |||||||||| | || | || || |||||||| Sbjct 273429 TTTGAGCCCTACACCTCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTT 273377 >seq2328 Length=411296 Score = 109 bits (120), Expect = 7e-19 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCTCGCTCCTTCGCCGAG 65079 |||||||| | ||||| |||| ||| | ||| ||||| |||||||||| || Sbjct 57353 AAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAAGTC---CTCCTTCGCCCAG 57297 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 ||||| |||| || || || ||||||||||||||| ||| | ||| | | || Sbjct 57296 CGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 57237 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| ||||| ||||| || || |||||| || || || || || Sbjct 57236 TTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCT 57177 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || ||||||||||||||| || |||||| Sbjct 57176 CGTGATGAGGGTCTCCACACCGACTTTGCC 57147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596548004180480