Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 170 2e-37
seq2328 109 7e-19
>seq1484
Length=366709
Score = 170 bits (188), Expect = 2e-37
Identities = 913/1433 (64%), Gaps = 57/1433 (4%)
Strand=Plus/Minus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| ||||||| ||||| | || ||| || || ||| |||| |||
Sbjct 274782 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 274723
Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 75329
| || || ||| || |||||| || | | |||| ||||| | || || ||||
Sbjct 274722 ATCGAAACCTACAACCTGATGTCG--AGCAAATTCTTCACCCACGCTTCTCCCACACTCT 274665
Query 75330 TCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388
|||| |||||||| || || || ||| ||||| ||||||||| ||| || ||||||
Sbjct 274664 TCAACGCTGGTACCCCTCAGGCC-CAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAG 274606
Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGG 75446
||||| || | |||||||| | || || | || | ||||| | ||||| ||| ||
Sbjct 274605 GACTCTATTGAGGGTATCTACGACACCCTCA-AGACT-TGCGCCATGATCTCCAAGATGG 274548
Query 75447 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 75506
| || || ||||| | || | ||| | | |||| || |||| || |
Sbjct 274547 CCGGTGGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCTATATTGCCGGCA 274488
Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566
| || ||| || | ||| | | || ||||| || || || ||| ||| || ||||
Sbjct 274487 CTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGCTCGCT 274428
Query 75567 ATGTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622
| || | | || | ||| ||| ||| | |||| ||||| | || || |||
Sbjct 274427 ACGTCGA-CCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCCTTGG 274369
Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682
|| |||||| || | || ||| | || | || ||||| || | || |||| |||
Sbjct 274368 CACGCCGATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGT 274309
Query 75683 TGTAGAGATCTCTTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740
| || |||||| | | || |||||||| ||||| ||||||||| |||| |||
Sbjct 274308 GCCCGTGA--CCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGAGA 274251
Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800
|| || | ||| |||| | || || || || || || || ||||| |
Sbjct 274250 AGAACGGGGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACG 274191
Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA--AGAGG----AGGGTAGAGCCAATG 75854
| |||||||| || ||| | ||| ||||| || ||| | ||||| | |||
Sbjct 274190 GCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCG---CAA-- 274136
Query 75855 CGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913
||| | || | | || | | ||| | || || ||| | | ||||| ||||||||
Sbjct 274135 -GACCAT-GAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGC 274078
Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973
| || | ||||| ||||||||||| ||| ||||| ||||| ||||| | ||
Sbjct 274077 AACCCTTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGC 274018
Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033
|| ||| ||||| || || |||||||| || | |||||| | ||||||
Sbjct 274017 ACCATCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTC 273958
Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT---CAATGAAGAGACTCGC 76090
|| || ||||| |||| || ||||| | || | | ||| | | | ||| ||
Sbjct 273957 GCGGTCTGCAACCTGGCCTCGCTCGCCTTGCCCACCTTTGTTGACTACAACGAG---GGC 273901
Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150
| || | | || || || || |||| || ||||| | || || ||| ||
Sbjct 273900 GTCTACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGA 273841
Query 76151 GTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210
|||| ||| || || || ||| || || || || || ||||| ||| |
Sbjct 273840 ATCATCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGTCACCGC 273781
Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA--- 76267
|| |||||| | ||||| || ||||| || |||| || || | || ||||
Sbjct 273780 CCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATG-----CCTTCCTGGCTCTGCGCATGC 273726
Query 76268 --TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325
|| || || ||| || || | || |||||||| ||||| || ||||
Sbjct 273725 CCTTCGAGTCTCCTGAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTACCACG 273666
Query 76326 CATCCCTGGAGGCGAGT-TGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383
| |||| | || ||| | |||| | | | || |||| |||| | ||
Sbjct 273665 CTGCCCT--CACCATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGA 273608
Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC--AAG 76441
|||||| |||| || || || | || |||| || |||| |||| || || || |
Sbjct 273607 GGGTTCCCCCGTCTCTCAGGGCATCCTCCAGTACGACATGT-GGAATGTCAAGCCCTCGG 273549
Query 76442 CTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501
|| || |||||||| | | | ||||| | |||||| || | ||| | || ||| |
Sbjct 273548 ATC-TCTGGGACTGGGACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCT 273490
Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561
||| | | || || ||||| || || |||| | || |||||||| || || || |||
Sbjct 273489 CTTCTCGTCGCGCCCATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGC 273430
Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTT 76614
||||| || ||||| | |||||||||| | || | || || ||||||||
Sbjct 273429 TTTGAGCCCTACACCTCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTT 273377
>seq2328
Length=411296
Score = 109 bits (120), Expect = 7e-19
Identities = 151/210 (72%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCTCGCTCCTTCGCCGAG 65079
|||||||| | ||||| |||| ||| | ||| ||||| |||||||||| ||
Sbjct 57353 AAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAAGTC---CTCCTTCGCCCAG 57297
Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139
||||| |||| || || || ||||||||||||||| ||| | ||| | | ||
Sbjct 57296 CGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 57237
Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199
| ||| | |||||||| ||||| ||||| || || |||||| || || || || ||
Sbjct 57236 TTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCT 57177
Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| ||||||||||||||| || ||||||
Sbjct 57176 CGTGATGAGGGTCTCCACACCGACTTTGCC 57147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596548004180480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |