Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2328 122 3e-22 seq1484 96.9 1e-14 seq1152 95.1 4e-14 >seq2328 Length=411296 Score = 122 bits (134), Expect = 3e-22 Identities = 188/264 (71%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || ||||||||| | || || ||||| ||||| || | Sbjct 381457 CTTGACGAGACGACGCTGGATGTAACCAGTTTCGGCGGTCTTAACAGCAGTATCGATCAA 381516 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| | | |||| |||| ||||||||||| | || | || ||| || || | | Sbjct 381517 ACCCTCTCTACCAGCCATGGCATGGAAGAAGAATTC-ACTGGGCGTAAGGCCACGGAGGT 381575 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 ||||| |||| ||||| ||||| ||||| || || | ||| |||||| || || || | Sbjct 381576 AGGAGTTCTCGACGAAGCCACGAGCCTCAGGAGAGTAGTCATCCTTGGTGAAATGGGGGA 381635 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | | || ||||| | || |||||||| || || ||| |||||||||| | | Sbjct 381636 GAGTGCGATACTTGAAGCCGAAGGGAATACGCTTACCCTCGACGATCTGCTGTCC--GAC 381693 Query 302822 ACGA--AATCATCTGCGAAATATT 302843 | || | ||||||| ||||| || Sbjct 381694 AAGAGCAGTCATCTGGGAAATGTT 381717 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| ||||||||| Sbjct 380666 AGAATTTCCTTGAGACGAGGGACACCAAGCGTGACGTT---CTTGGACGAAACACCAGCG 380722 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| |||||||| || | || |||| ||||||||||| || || ||||| Sbjct 380723 AAATGGAAGGTATTCAGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATA 380782 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||| ||||| || || || Sbjct 380783 ACACCGACCATCTCGCCAGG 380802 >seq1484 Length=366709 Score = 96.9 bits (106), Expect = 1e-14 Identities = 471/742 (63%), Gaps = 13/742 (2%) Strand=Plus/Plus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACAGCA 155650 || ||||| || || ||||| ||| | | || ||| ||| || | ||||| ||| Sbjct 273938 GAGGCCAGGTTGCAGACCGCGACCTCATCAGGCG-CGCAGTACTCGATGATCTCCGTGCA 273996 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 ||||| || || ||||||||| | ||||||||||| || | ||| ||||| Sbjct 273997 GAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 274056 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 |||||| || ||| | ||| | || ||||| |||| || || || || |||||| Sbjct 274057 CTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAG 274116 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830 | |||| || || |||| |||| | ||| || ||| |||| | Sbjct 274117 CTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC 274176 Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890 | | ||||| ||||| || || ||| |||||||||| | |||||| | || | Sbjct 274177 CTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGT 274236 Query 155891 CCAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATA 155947 ||| || || | ||| | || ||| || | || ||| | ||| Sbjct 274237 CCAGTCCCCGTTCTTCTC---TACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAG 274293 Query 155948 GAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTC 156007 ||||||||| | || |||||| | |||||| ||||| || || || ||||| || Sbjct 274294 GAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTC 274353 Query 156008 CTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCC 156064 | ||| | || ||||| || || || || ||| ||| | | ||||| Sbjct 274354 GAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCC 274413 Query 156065 ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATT 156124 |||||| || || || |||||||| || |||||||||| ||||| || | | ||| || Sbjct 274414 ACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTT 274473 Query 156125 GGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAG 156184 || || || || || ||| ||||| || || | | || | ||||| | || Sbjct 274474 CGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAG 274533 Query 156185 TCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243 ||||| ||||| | |||| || || || ||||| ||| | || | | | |||| Sbjct 274534 ACCAATGCCACCGG-CCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATAC 274592 Query 156244 CTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTG 156303 | |||||||| || || | ||| | || |||| || | || | | || | Sbjct 274593 CCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGG 274652 Query 156304 TTCCAGCGTTGAATAGTGTAGG 156325 | ||||||||||| ||||| || Sbjct 274653 TACCAGCGTTGAAGAGTGTGGG 274674 >seq1152 Length=46725 Score = 95.1 bits (104), Expect = 4e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||||||||| || |||||||| ||||||||||| || Sbjct 31465 GCACCGTGGGCAATCATACAATCACGCTCCATCTCTCCGAAACGCAGACCACCATCACGG 31524 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | ||||||| | ||||| Sbjct 31525 GCACGACCCTCGACGGGCTG 31544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471762988207952