Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2328 122 3e-22
seq1484 96.9 1e-14
seq1152 95.1 4e-14
>seq2328
Length=411296
Score = 122 bits (134), Expect = 3e-22
Identities = 188/264 (71%), Gaps = 6/264 (2%)
Strand=Plus/Plus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||||||||| || ||||||||| | || || ||||| ||||| || |
Sbjct 381457 CTTGACGAGACGACGCTGGATGTAACCAGTTTCGGCGGTCTTAACAGCAGTATCGATCAA 381516
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701
||| | | |||| |||| ||||||||||| | || | || ||| || || | |
Sbjct 381517 ACCCTCTCTACCAGCCATGGCATGGAAGAAGAATTC-ACTGGGCGTAAGGCCACGGAGGT 381575
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
||||| |||| ||||| ||||| ||||| || || | ||| |||||| || || || |
Sbjct 381576 AGGAGTTCTCGACGAAGCCACGAGCCTCAGGAGAGTAGTCATCCTTGGTGAAATGGGGGA 381635
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
| || | | || ||||| | || |||||||| || || ||| |||||||||| | |
Sbjct 381636 GAGTGCGATACTTGAAGCCGAAGGGAATACGCTTACCCTCGACGATCTGCTGTCC--GAC 381693
Query 302822 ACGA--AATCATCTGCGAAATATT 302843
| || | ||||||| ||||| ||
Sbjct 381694 AAGAGCAGTCATCTGGGAAATGTT 381717
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || |||||| | || ||||| |||||||| |||||||||
Sbjct 380666 AGAATTTCCTTGAGACGAGGGACACCAAGCGTGACGTT---CTTGGACGAAACACCAGCG 380722
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| |||||||| || | || |||| ||||||||||| || || |||||
Sbjct 380723 AAATGGAAGGTATTCAGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATA 380782
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||| ||||| || || ||
Sbjct 380783 ACACCGACCATCTCGCCAGG 380802
>seq1484
Length=366709
Score = 96.9 bits (106), Expect = 1e-14
Identities = 471/742 (63%), Gaps = 13/742 (2%)
Strand=Plus/Plus
Query 155592 GACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACAGCA 155650
|| ||||| || || ||||| ||| | | || ||| ||| || | ||||| |||
Sbjct 273938 GAGGCCAGGTTGCAGACCGCGACCTCATCAGGCG-CGCAGTACTCGATGATCTCCGTGCA 273996
Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710
||||| || || ||||||||| | ||||||||||| || | ||| |||||
Sbjct 273997 GAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 274056
Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770
|||||| || ||| | ||| | || ||||| |||| || || || || ||||||
Sbjct 274057 CTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAG 274116
Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830
| |||| || || |||| |||| | ||| || ||| |||| |
Sbjct 274117 CTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC 274176
Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890
| | ||||| ||||| || || ||| |||||||||| | |||||| | || |
Sbjct 274177 CTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGT 274236
Query 155891 CCAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATA 155947
||| || || | ||| | || ||| || | || ||| | |||
Sbjct 274237 CCAGTCCCCGTTCTTCTC---TACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAG 274293
Query 155948 GAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTC 156007
||||||||| | || |||||| | |||||| ||||| || || || ||||| ||
Sbjct 274294 GAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTC 274353
Query 156008 CTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCC 156064
| ||| | || ||||| || || || || ||| ||| | | |||||
Sbjct 274354 GAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCC 274413
Query 156065 ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATT 156124
|||||| || || || |||||||| || |||||||||| ||||| || | | ||| ||
Sbjct 274414 ACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTT 274473
Query 156125 GGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAG 156184
|| || || || || ||| ||||| || || | | || | ||||| | ||
Sbjct 274474 CGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAG 274533
Query 156185 TCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243
||||| ||||| | |||| || || || ||||| ||| | || | | | ||||
Sbjct 274534 ACCAATGCCACCGG-CCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATAC 274592
Query 156244 CTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTG 156303
| |||||||| || || | ||| | || |||| || | || | | || |
Sbjct 274593 CCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGG 274652
Query 156304 TTCCAGCGTTGAATAGTGTAGG 156325
| ||||||||||| ||||| ||
Sbjct 274653 TACCAGCGTTGAAGAGTGTGGG 274674
>seq1152
Length=46725
Score = 95.1 bits (104), Expect = 4e-14
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| | ||||||||||||||||||||| || |||||||| ||||||||||| ||
Sbjct 31465 GCACCGTGGGCAATCATACAATCACGCTCCATCTCTCCGAAACGCAGACCACCATCACGG 31524
Query 251545 GCCCTACCCTCGGCAGGCTG 251564
|| | ||||||| | |||||
Sbjct 31525 GCACGACCCTCGACGGGCTG 31544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471762988207952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |